Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq641 147 5e-30 seq17 147 5e-30 seq547 123 6e-23 >seq641 Length=2967 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 || || | |||||| || || |||||||| || || || |||||||| |||||||| || Sbjct 489 AGGTGGAGCGTGCTCTCCTTCTGGATATTGTAATCAGCAAGCGTGCGCCCGTCTTCCAAC 430 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 | ||| ||||||| ||| ||||| || | ||||| ||||| || || ||||| Sbjct 429 AGCACTCCAGCGAAGACCAGGCGCTGCTGGTGAGGAGGGATGCCTTCCTTGTCTTGGATC 370 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| |||||| || || |||||||||| || || || || | || ||||| ||| Sbjct 369 TTCGCCTTCACGGCGTCGATCGAATCGCTCGGCTCCACCTCAAGGGCAATGGTCTTGCCG 310 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| |||||||| Sbjct 309 GTCAGGGTCTTGACGAAGATCTGCAT 284 >seq17 Length=497611 Score = 147 bits (162), Expect = 5e-30 Identities = 264/382 (69%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 ||||| || | || || | ||||||||||| ||||||||||| || | || | ||| Sbjct 24944 CAAGCATCAACATCTGAACTTTATGGAAAAGTTCAAGAAATTCCACAAAAAGAGACAACT 25003 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 72536 || || ||||| |||| || |||| ||| || || ||||| || | |||||| ||| Sbjct 25004 CCATTCTATCCAAGAAGTCCATACGCTGTCGCTAAATTGTATGCATTTTGGATAATAAAA 25063 Query 72537 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGA--TTTGTTTCAATCACGAGA 72594 ||||| ||||| | ||| || | || || || | || ||||||| ||||||||| Sbjct 25064 AATTATCGTGAAGCTTATGGTATCTTTGGTTGTAA-TGGAATTTTGTTT-AATCACGAGT 25121 Query 72595 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT 72654 ||| | ||||| || | || || || | || || || | | || || || || Sbjct 25122 CTCCAAGAAGAGGTAATAATTTTGTTACAAGAAAGATAACTAGAGCTGTAGCTAAAATAA 25181 Query 72655 TCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGAT 72714 | |||||| || | | || | | |||||| | ||||| ||| | ||||||||| Sbjct 25182 GTATTGGTGTACAAGAGAGTATATCATTAGGTAATCTTGATGCTAAACGTGATTGGGGAC 25241 Query 72715 ATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACT 72774 |||| || || || ||||| |||||| || || ||||| ||| ||| ||||| | Sbjct 25242 ATGCACGTGAATATGTTGAAGCTATGTGGAGAATCCTCCAACATGATGTTCCTGATGATT 25301 Query 72775 ATGTGATTGCAACAGGGAAAAC 72796 ||| || |||||||| ||||| Sbjct 25302 TTGTTATAGCAACAGGAAAAAC 25323 >seq547 Length=3469 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || || |||||||| || ||||| | ||| || | ||| ||| Sbjct 1610 AGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCT 1669 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||||||||| || ||||| ||||| |||||| ||||||||||||||| || Sbjct 1670 TCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCT 1729 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || || || | ||| ||||| || |||| || | ||| ||||| || || || || Sbjct 1730 TGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATTGTT 1789 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || | |||||| || || || |||||| Sbjct 1790 TTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| |||||||| ||||||||||| || || || ||||| || |||| || | || Sbjct 2144 TGGAATTCCTTCCTTATCCTGGATCTTAGCCTTGACGTTATCAATAGTGTCTGAAGGCTC 2203 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || |||||||| |||| |||||| || || || ||||| Sbjct 2204 AACTTCAAGCGTTATAGTCTTCCCTGTCAAAGTCTTAACAAAGATTTGCAT 2254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179627043077180