Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq17 147 5e-30 >seq17 Length=497611 Score = 147 bits (162), Expect = 5e-30 Identities = 264/382 (69%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 ||||| || | || || | ||||||||||| ||||||||||| || | || | ||| Sbjct 24944 CAAGCATCAACATCTGAACTTTATGGAAAAGTTCAAGAAATTCCACAAAAAGAGACAACT 25003 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 68525 || || ||||| |||| || |||| ||| || || ||||| || | |||||| ||| Sbjct 25004 CCATTCTATCCAAGAAGTCCATACGCTGTCGCTAAATTGTATGCATTTTGGATAATAAAA 25063 Query 68526 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGA--TTTGTTTCAATCACGAGA 68583 ||||| ||||| | ||| || | || || || | || ||||||| ||||||||| Sbjct 25064 AATTATCGTGAAGCTTATGGTATCTTTGGTTGTAA-TGGAATTTTGTTT-AATCACGAGT 25121 Query 68584 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT 68643 ||| | ||||| || | || || || | || || || | | || || || || Sbjct 25122 CTCCAAGAAGAGGTAATAATTTTGTTACAAGAAAGATAACTAGAGCTGTAGCTAAAATAA 25181 Query 68644 TCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGAT 68703 | |||||| || | | || | | |||||| | ||||| ||| | ||||||||| Sbjct 25182 GTATTGGTGTACAAGAGAGTATATCATTAGGTAATCTTGATGCTAAACGTGATTGGGGAC 25241 Query 68704 ATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACT 68763 |||| || || || ||||| |||||| || || ||||| ||| ||| ||||| | Sbjct 25242 ATGCACGTGAATATGTTGAAGCTATGTGGAGAATCCTCCAACATGATGTTCCTGATGATT 25301 Query 68764 ATGTGATTGCAACAGGGAAAAC 68785 ||| || |||||||| ||||| Sbjct 25302 TTGTTATAGCAACAGGAAAAAC 25323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102854423523500