Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq15 127 2e-24 seq5 98.7 1e-15 seq547 96.9 3e-15 seq29 96.9 3e-15 seq641 82.4 8e-11 seq82 82.4 8e-11 >seq15 Length=622252 Score = 127 bits (140), Expect = 2e-24 Identities = 537/840 (64%), Gaps = 11/840 (1%) Strand=Plus/Minus Query 154593 AAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAATTA 154652 || || ||||| |||| ||| || | | || |||| |||||||| | || | |||| Sbjct 203975 AAATTACAAACAGCAACTTCATCTGGAGCACAATATTCAACAATTTCAGTACAAAGATTA 203916 Query 154653 CTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGTAC 154712 ||| ||| || |||| ||||| ||||| ||| | || || || ||||| Sbjct 203915 GAACATTTAATTGTTCCCAAGTTTTGTTGATTACTTTTTCTATTACAATGATCCTTGTAA 203856 Query 154713 AAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAAT--TGTGCGAAACAGACTTC 154770 | || || || || || ||||| | ||| ||||| ||| | ||| ||| | | | Sbjct 203855 ACCATATATGGAGTTCCAGTTTCTATTTGACTTTCACAAATCTTTTGCCAAATAACCCTA 203796 Query 154771 GCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTTTTCAA 154830 || || | ||| | | || || || ||||||| | | ||||| |||||||| Sbjct 203795 GC--CTTGATTTGTTTTCTGTAACGCTTCTCAGTCTCATACTTTGTGTACAATTTTTCAA 203738 Query 154831 ACTC-TAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATGACCAC 154889 | || | | ||| || || || ||||| | ||||||||||||||||| Sbjct 203737 ATTCATCCCCCCAACAA-TCTTCTAATCCTGGACATTCATGAGGACACATCAATGACCAA 203679 Query 154890 ATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAA 154949 | | || || || ||||||||||||||||| || ||||| ||| | || || ||| Sbjct 203678 TATGAATCTTTTTCAACACGTTTCATAAACAAATCAGGAACCCATAAACCATAGAATAAA 203619 Query 154950 TCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAAT-CATATAT 155008 ||||| || || ||||| | || | ||| ||| | || |||||| | |||| || Sbjct 203618 TCACGAGCACGTTCCTCTTCTGGTCCTGTATTTTTCTTAAGATCCAAAAATTCCATA-AT 203560 Query 155009 GTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC---TTTGCGTTTTCCTCCTTG 155065 || || ||||| || || ||||| | || | || || | | ||||| ||||| Sbjct 203559 ATCTGCATGCCATGGTTCCAAATAAATTGCAAAAGCTCCAGGTCTCTTATTTCCACCTTG 203500 Query 155066 ATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGT 155125 ||| || | | || ||| ||| | || | ||||| |||| ||| || | | || Sbjct 203499 ATCAACATATCTTGCAGTATTGTTGAAAACTCTCAACATTGGTACCAATCCATTTGATGT 203440 Query 155126 GCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAA 155185 || || || |||| || || ||||| ||||||||| | || | Sbjct 203439 TCCATTAGTTCCACCAATAAATGATCCATTGGCACGAATACAATGAACATTTAATCCAAT 203380 Query 155186 ACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGAT 155245 |||||| | |||| || ||| ||||| | ||| || || || || |||| || Sbjct 203379 ACCTCCAGCAGATTTTGAAATTAAAGCACATTGTTTCAATGTATCATAAATCCCTTCAAT 203320 Query 155246 GCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGGCAGCCGGC 155305 ||| | || || || |||||||| ||||| ||||| || ||| || || Sbjct 203319 AGAATCTCCAGCCATTGTTAATAAGAAACATGAAGACAATTGTGGACGAGTTGTTCCTGC 203260 Query 155306 CGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGTAAGTTTC 155365 ||||| ||| ||| ||| ||||||||| ||| | | | || ||||| ||||| Sbjct 203259 ATTAAATAGTGTTGGAGAAGCATGTGTAAACCATTTCTGTGACATAAAATTGTATGTTTC 203200 Query 155366 GATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 ||| | | ||||| || || || ||||| | || || | ||| || | ||||| Sbjct 203199 GATAACTGAATCAATATCTTCTCCATGAATACCAACAGCAACTCTCATAAGTAAATGTTG 203140 >seq5 Length=1449561 Score = 98.7 bits (108), Expect = 1e-15 Identities = 356/552 (64%), Gaps = 15/552 (3%) Strand=Plus/Minus Query 154561 TTTTAATAAAACGATTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAAC 154620 ||| || ||| | ||||| | | ||| ||||||| || || || ||||| | ||| Sbjct 1212875 TTTCAACAAATCTATTTAAAGCAATAGATCCCAAGTTACATACAGCGATTTCATTTGAAG 1212816 Query 154621 TACTGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCT 154680 | ||||| |||||||||| || ||||| ||| ||| | || | || || | Sbjct 1212815 AAGAATATTGAACAATTTCTGTACATAAATTTGAACATTTTATGATTCCTAAATTATTTT 1212756 Query 154681 GATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTT 154740 |||| ||| || || ||||| || | ||||| || || || ||||| | || Sbjct 1212755 GATTACTTTTACGATTACAATGATCTTTATAAACCATGTAAGGTGTTCCAGTTTCAATTT 1212696 Query 154741 GGGTTTCAATAATTGTGCGAAACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTT 154800 | ||||| ||| | | | || |||| |||| | ||||| || | || |||| Sbjct 1212695 GACTTTCACATATTTTTTGCCAGAGCATTCGTGCCTTGATTTGACTTCTATAACGTTTTT 1212636 Query 154801 CGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGA-CAA-ACC 154858 | | ||||||| | || | ||||||| ||| || || | | ||| ||| Sbjct 1212635 CATTTTCATATTTAACATATAAAGTTTCAAATTCTT--CTCCCCAACTATTATCAAGACC 1212578 Query 154859 GGGACAGCGGTCGGGACACATCAATGACCAC----ATTTCGTTTTGTTGTACGCGTTTCA 154914 ||||| || ||||||||||||||||| | | | ||| || ||||||| Sbjct 1212577 TGGACATTCGTGAGGACACATCAATGACCAATAAGAATCCCTTTCA----ACACGTTTCA 1212522 Query 154915 TAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGC 154974 |||| ||||| || ||||| ||| | || || |||||||| || || ||||| | | Sbjct 1212521 TAAATAAATCAGGAACCCATAAACCATAAAATAAATCACGAGCACGTTCCTCTTCCGGAC 1212462 Query 154975 CCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATA 155034 | | ||| ||| | ||| ||||| | | | || || || ||||| || || | ||| | Sbjct 1212461 CTGTATTTTTCTTAAGATTTAAAAATTGAAAAATATCTGCATGCCATGGTTCAATATAAA 1212402 Query 155035 CGGCCATCGCGCCTTTGCGT---TTTCCTCCTTGATCCACGTGACGCACACAATTATTGT 155091 || | || ||| | | ||||| |||||||| || | ||| || || ||| Sbjct 1212401 TAGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATAACGAGCAGTATCATTAA 1212342 Query 155092 ACACGCGCAACA 155103 | || || |||| Sbjct 1212341 ATACTCGTAACA 1212330 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/258 (67%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 153982 ACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGG 154041 ||||||||| | | ||||| | | | ||| |||| | ||||||||||| || | Sbjct 1213466 ACAAATTTAATTCAACCAAATCGTGTAAAAGGTGTGGGTTTACCACTTGAAAATCTCCAG 1213407 Query 154042 CCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTA 154101 |||||| || | || ||||||||| || | || || || || || || || || | Sbjct 1213406 ACAATACCCGTCTCATATACAAATTTGAAGTATAAGGTTCAAATGACTCATTATTACCAA 1213347 Query 154102 ATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGT 154161 | |||||||| || | |||||| ||||| || |||||||| || |||| | ||| | Sbjct 1213346 AAATTTGAGCAGTTGATGCTGTTGGCATTGGAGCTACCAACAATGAATTTCTTATACCAT 1213287 Query 154162 GTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCC 154221 |||| ||| |||||| || ||||| ||| || || | || || |||| Sbjct 1213286 ATTTTCTAATTTTTTCTTTTAATAATGACCAATCCCATAAATTACTTGGAGTAACTTTCC 1213227 Query 154222 ACATGTCGTATTGCAAAA 154239 | | || ||||| |||| Sbjct 1213226 ATAAATCATATTGTAAAA 1213209 >seq547 Length=3469 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||| || ||||| | | || | | |||||||| ||| Sbjct 1391 TGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTCAAGTTGC 1450 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| |||| || || || ||||| ||||| || ||||| || ||||| || ||| Sbjct 1451 TTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGAATCTTT 1510 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | ||||| | || || || | ||| | ||||| || || Sbjct 1511 GACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTTTCCAGTT 1570 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || ||||| ||||| Sbjct 1571 AAAGTCTTAACAAAAATCTGCAT 1593 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || ||||| |||||||| || | || || | | ||| Sbjct 1610 AGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCT 1669 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || || |||||| | || || || || || || || || ||||||||||| ||| Sbjct 1670 TCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCT 1729 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || || || || | || ||| | || ||||| | ||| | || Sbjct 1730 TGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATTGTT 1789 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || ||||| || || |||||||||||| Sbjct 1790 TTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 >seq29 Length=268433 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||| || ||||| | | || | | |||||||| ||| Sbjct 198340 TGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTCAAGTTGC 198399 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| |||| || || || ||||| ||||| || ||||| || ||||| || ||| Sbjct 198400 TTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGAATCTTT 198459 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | ||||| | || || || | ||| | ||||| || || Sbjct 198460 GACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTTTCCAGTT 198519 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || ||||| ||||| Sbjct 198520 AAAGTCTTAACAAAAATCTGCAT 198542 >seq641 Length=2967 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || || |||||||| || | |||||| ||||||| | | || || || | Sbjct 474 TCCTTCTGGATATTGTAATCAGCAAGCGTGCGCCCGTCTTCCAACAGCACTCCAGCGAAG 415 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 | || |||||||||| ||||| || ||||| || ||||| || || ||| || | Sbjct 414 ACCAGGCGCTGCTGGTGAGGAGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACGGCG 355 Query 64373 TCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | | ||| | |||| ||||| || | | | |||||||||||||| || || || Sbjct 354 TCGATCGAATCGCTCGGC-TCCACCTCAAGGGCAATGGTCTTGCCGGTCAGGGTCTTGAC 296 Query 64432 GAAAATTTGCAT 64443 ||| || ||||| Sbjct 295 GAAGATCTGCAT 284 >seq82 Length=59906 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| | ||||| || || ||||| |||||||||||||| || ||||| ||||| | Sbjct 47880 CCAGCAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGAC 47821 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| || | ||||| | || ||||| | ||| | || ||||| || | | Sbjct 47820 TTGACATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAGA 47761 Query 64424 GTTTTTACGAAAATTTGCAT 64443 ||||| ||||| |||||||| Sbjct 47760 GTTTTGACGAAGATTTGCAT 47741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499633495536400