Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq182 286 2e-72 >seq182 Length=14523 Score = 286 bits (316), Expect = 2e-72 Identities = 578/849 (68%), Gaps = 23/849 (3%) Strand=Plus/Minus Query 65919 ACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTA 65978 ||||||||| | | || ||| || ||||||||||| || ||| |||||||| Sbjct 8877 ACCGGCTCGCTGGGCCTCGACATGGCGCTCGGCATCGGCGGCCTGCCGGTCGGCCGGGTG 8818 Query 65979 GTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCC 66038 | ||| | | ||| || || || || || ||| | ||| | ||| ||| | |||||| Sbjct 8817 ATCGAGGTGTTCGGCCCCGAATCCTCGGGCAAGACGACGCTCGCCCTGCACACCGTGGCC 8758 Query 66039 AATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCT 66098 | | ||||||| || ||| ||||||| | ||||||||||||| | || ||||| Sbjct 8757 GAGGTCCAGAAGAAGGGCGGCGTGGCCGCCTTCGTCGACGCCGAACACGCGCTGGACCCG 8698 Query 66099 GAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACT 66158 | || || ||| || || | | ||| | || |||| |||||| ||||| Sbjct 8697 GTCTATGCGCAAAAGCTGGGCGTCAACCTGGACGACCTGCTGGTGTCGCAGCCCGACACG 8638 Query 66159 GGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATC 66218 ||||||||||| ||||||||||| ||| || || || |||| || |||| | Sbjct 8637 GGCGAGCAGGCGCTGGAGATCGTCGACACCCTGGTGCGCTCGGGCGCCGTGGACATCGTG 8578 Query 66219 GTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGAC 66278 || || ||||| || || |||||| ||| || ||||| ||||||| || || || ||| Sbjct 8577 GTGGTCGACTCGGTCGCCGCCCTGACGCCACGCGCGGAAATCGAAGGCGAGATGGGCGAC 8518 Query 66279 TCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACG 66338 | ||||||||| |||||||||||||| |||||| ||||||| ||||| | | || Sbjct 8517 AGCCTGCCCGGCCTGCAGGCCCGCCTGATGTCGCAGGCCCTGCGCAAACTGACGGCCTCG 8458 Query 66339 ATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAAC 66398 || ||| | || || ||||| | || ||| | || | ||||||||| | Sbjct 8457 ATCTCCAAGTCGAAGTGCATCGTCCTGTTCATCAACCAGATCCGTCACAAGATCGGCGTC 8398 Query 66399 GTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCG 66458 || |||||| || ||||| || || || || || || ||| |||||||||||| Sbjct 8397 ATG---TACGGCTCGCCCGAGACGACGACGGGCGGCAATGCGCTGAAGTTCTACGCCTCG 8341 Query 66459 GTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAAC 66518 ||||| | || ||||| | | || | | ||| | |||| |||| ||||||||| Sbjct 8340 GTGCGCCTCGACATCCGCCGCACCGGCGCGATCAAGAACCGCGACGAGGTCGTCGGCAAC 8281 Query 66519 CGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTT 66578 ||| ||||| ||||| |||||||||||| | || || ||| |||| ||| | | | | Sbjct 8280 ACCACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCTCCGCCGTTCCGCGAGG-TCA-TCT 8223 Query 66579 TC--CATCGTCTACGGCGAGGGCATTTCC-CGCGAGGCTGAACTCCTCGACATGGCCGTT 66635 || |||| | |||||||| ||||| ||| | ||| || || |||| ||| ||| Sbjct 8222 TCGACATCATGTACGGCGAAGGCATCTCCAAGATCGGC-GAGATCATCGATCTGGGCGT- 8165 Query 66636 TCCCGAGGGC----TCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACAT 66691 | ||| | ||||| ||||||| || | |||||| |||| || ||| Sbjct 8164 ---CAAGGCCAACATCATCGAGAAGTCCGGTTCGTGGTTCTCCTACGACTCCACCCGCAT 8108 Query 66692 CGGCCAGGGCAAGCCCAAGACCG---TGCAGTGGCTGAAGGACAACCCGGACGTCGCCGC 66748 ||| |||||| | | ||| || | ||| |||||| ||||||| ||| | ||| Sbjct 8107 CGGTCAGGGC---CGCGAGAACGCGAAGGAGTTCCTGAAGAACAACCCCGACATGGCCCT 8051 Query 66749 CTCCATCGA 66757 | ||||||| Sbjct 8050 CGCCATCGA 8042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242465051254520