Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq1162 89.7 5e-13 seq370 89.7 5e-13 seq97 84.2 2e-11 >seq1162 Length=1364 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| |||||| ||||||||| Sbjct 819 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 878 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 879 CCTGCCCCCGCAAC 892 >seq370 Length=5836 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| |||||| ||||||||| Sbjct 1156 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 1215 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 1216 CCTGCCCCCGCAAC 1229 >seq97 Length=38978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | ||||||| |||||||||| ||||||||||||||| ||| || ||||||||| Sbjct 124 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGCAGGTTCAAAT 183 Query 92675 CCCACTCCCGC 92685 || ||||||| Sbjct 184 CCTGCTCCCGC 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526586485711200