Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq547 96.9 3e-15 seq5 91.5 1e-13 >seq547 Length=3469 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | ||||||||||||| ||||||||||| Sbjct 1595 CCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAG 1654 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || |||||||| |||| | |||| ||||| ||||| || || || Sbjct 1655 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 1714 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | ||| | ||| || | ||||| | | || | Sbjct 1715 ATTCCTTCTTTGTC-TTGAATCTTGGATTTGACGTTG-TCGATAGTGTCAGATGGTTCAA 1772 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||| ||||| | ||| || |||||||| ||||| Sbjct 1773 CTTCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCAT 1821 >seq5 Length=1449561 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 |||| ||||||||||| || || | ||| || ||||||| ||| | ||| ||| ||| Sbjct 1213430 GGTTTACCACTTGAAAATCTCCAGACAATACCCGTCTCATATACAAATTTGAAGTATAAG 1213371 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 ||||||| || || ||||| || | |||||||| || | ||| || ||||| || | Sbjct 1213370 GTTCAAATGACTCATTATTACCAAAAATTTGAGCAGTTGATGCTGTTGGCATTGGAGCTA 1213311 Query 153148 CCAACAAAGAATT 153160 ||||||| ||||| Sbjct 1213310 CCAACAATGAATT 1213298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251172063200