Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq547 122 8e-23 seq29 104 2e-17 seq5 98.7 9e-16 seq15 93.3 4e-14 >seq547 Length=3469 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || ||||| || ||||| ||||||||||| || || || Sbjct 1592 ATACCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCA 1651 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | ||||||||| || | || | ||||| || || || Sbjct 1652 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGT 1711 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || |||||||| |||||||| || ||||| || | || | ||||| || | || Sbjct 1712 GGGATTCCTTCTTTGTCTTGAATCTTGGATTTGA-CGTTGTCGATAGTGTCAGATGGTTC 1770 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| ||||| || |||| ||| || |||||||||||||| Sbjct 1771 AACTTCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCAT 1821 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || |||||||| ||||| ||||||||||| | ||| | ||| || | ||| Sbjct 1391 TGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTCAAGTTGC 1450 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | ||||| ||||| || || || ||||| ||||||||||| ||| Sbjct 1451 TTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGAATCTTT 1510 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | || ||||||| || || || ||||| | || || || || Sbjct 1511 GACTTGA-CGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTTTCCAGT 1569 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || ||| || |||||||| ||||| Sbjct 1570 TAAAGTCTTAACAAAAATCTGCAT 1593 >seq29 Length=268433 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || |||||||| ||||| ||||||||||| | ||| | ||| || | ||| Sbjct 198340 TGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTCAAGTTGC 198399 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | ||||| ||||| || || || ||||| ||||||||||| ||| Sbjct 198400 TTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGAATCTTT 198459 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | || ||||||| || || || ||||| | || || || || Sbjct 198460 GACTTGA-CGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTTTCCAGT 198518 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || ||| || |||||||| ||||| Sbjct 198519 TAAAGTCTTAACAAAAATCTGCAT 198542 >seq5 Length=1449561 Score = 98.7 bits (108), Expect = 9e-16 Identities = 344/532 (65%), Gaps = 4/532 (1%) Strand=Plus/Plus Query 123830 AAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTC 123889 ||| |||||||| || || || ||| | |||| |||||| || || ||| | ||| | || Sbjct 1212937 AAAAAATTTGAATAAGATAATAGATATAAATTATTATCCATTAGAAGAAACTCGTATATC 1212996 Query 123890 TAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAAT 123949 ||| ||||||| | || | || | || ||||||| ||||| || | ||| || | Sbjct 1212997 AAATATGAAACATCGTCCTATTGGCATTGGTGTTCAAGGATTGGCAGATACTTTTATACT 1213056 Query 123950 GCTGCGCATGCCGTACGAAAGCGACGAAGC-AAAGTTGCTTAATACGCAAATAGCCGAAA 124008 | | || |||| |||| |||| | | || | ||||| |||| Sbjct 1213057 TTTAAGATATCCCTACGCTTCTTCACAAGCTAAAGATT-TAAACAAAAAAATATTTGAAA 1213115 Query 124009 CAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAAAATTCACGGCGCGTAC 124067 |||| ||| | || || ||||| || || ||| | || ||| | | | || | || Sbjct 1213116 CAATATATCATGGTGCATTGGAAGCTTCATGTGAATTAGCTGAAGAAT-ATGGTCCTTAT 1213174 Query 124068 GAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCT 124127 |||| ||| | || | | || || ||||| || || || | ||||| | | Sbjct 1213175 GAAACTTATGAAGGTTCTCTTGTATCTCGTGGCATTTTACAATATGATTTATGGAAAGTT 1213234 Query 124128 ACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTG 124187 || || | ||||| ||||| ||| | |||||| || || | | ||| | Sbjct 1213235 ACTCCAAGTAATTTATGGGATTGGTCATTATTAAAAGAAAAAATTAGAAAATATGGTATA 1213294 Query 124188 CGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAAC 124247 | || || ||||||| || ||||| || ||| | |||||||||||||| || || Sbjct 1213295 AGAAATTCATTGTTGGTAGCTCCAATGCCAACAGCATCAACTGCTCAAATTTTTGGTAAT 1213354 Query 124248 AACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGAT 124307 || || || || || || | ||| |||||||| || |||| || || | || ||| Sbjct 1213355 AATGAGTCATTTGAACCTTATACTTCAAATTTGTATATGAGACGGGTATTGTCTGGAGAT 1213414 Query 124308 TTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGT 124359 ||||||||| |||| | || | | |||| ||||| | |||||||||| Sbjct 1213415 TTTCAAGTGGTAAACCCACACCTTTTACACGATTTGGTTGAATTAAATTTGT 1213466 >seq15 Length=622252 Score = 93.3 bits (102), Expect = 4e-14 Identities = 193/288 (67%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 123594 GAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAA 123653 |||| ||| | ||||| ||||| || || ||| | ||||| || || || || ||| Sbjct 203821 GAAAGTCAAATAGAAACTGGAACTCCATATATGGTTTACAAGGATCATTGTAATAGAAAA 203880 Query 123654 ACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAA 123713 | ||||| |||||||||||||| |||||| ||||||||| | |||||| | ||| Sbjct 203881 AGTAATCAACAAAACTTGGGAACAATTAAATGTTCTAATCTTTGTACTGAAATTGTTGAA 203940 Query 123714 TACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGC 123773 || | | | | ||| |||| || || |||||||| | || ||| ||||| | | | Sbjct 203941 TATTGTGCTCCAGATGAAGTTGCTGTTTGTAATTTAGGATCAATTGCATTGAATAGATTC 204000 Query 123774 GTCGA-------AAACGGC-----GCTTTTAATTTCCAAACGCTCAAACGCATAACAAAA 123821 || || ||| ||| | |||||||| | || | | | | || Sbjct 204001 GTTGATATTGAGAAAGGGCAACCATCATTTAATTTTAATCAACTTCATCTTGTTTCTAAG 204060 Query 123822 ACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCT 123869 | | | | || |||||||| |||||||| ||||| |||| ||||||| Sbjct 204061 ATTCTTGCTAAAAATTTGAATAAAATTATTGATGTCAATTATTATCCT 204108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451992973427600