Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq148 93.3 2e-14 seq94 91.5 6e-14 >seq148 Length=19139 Score = 93.3 bits (102), Expect = 2e-14 Identities = 202/299 (68%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 9119 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 9178 ||||||||| ||||||||| |||||||||| ||| ||||||||||| ||| | || Sbjct 693 CGTCAACAAGGTCATCCTCATCGGCAATCTGGGCCGCGACCCGGAAATCCGTTCGCTGAA 634 Query 9179 GAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAAGGACAAGGC 9238 | ||||||| || |||| | || |||| || | || || |||||||| Sbjct 633 CAACGGCGACCGCGTCGCCAACCTGCGCATCGCCACCTCGGAAACCTGGCGCGACAAGGC 574 Query 9239 GAGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCTTC---GGCCGCCT 9295 | ||||||| ||||||| ||||||||||||| || | ||||| | ||| Sbjct 573 CACCGGCGAGCGCAAGGAAAAGACCGAGTGGCACTCGGTTGTCATCTTCAATGAGAACCT 514 Query 9296 CGCCGAGATCGTCGACGAGCACCTTCGCAAGGGCGCATCGGTCTACATCG-AGGGGCGCA 9354 |||| | | | || || | || ||||| | ||| || |||| ||| || | Sbjct 513 CGCCAAAGTGGCTGAGCAGTATCTGAAGAAGGGTTCCAAGGTTTATATCGAAGGTGCAC- 455 Query 9355 TCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATCGTC 9413 || |||| || |||||||||||||| ||| || || |||||||||||||| Sbjct 454 TCCAGACACGTAAGTGGCAGGATCAGCAGGGCGTCGAGAAGTATTCGACCGAGATCGTC 396 >seq94 Length=41210 Score = 91.5 bits (100), Expect = 6e-14 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 9119 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 9178 ||||||||| ||||||||| ||||||| || ||| |||||||||| |||| || Sbjct 29208 CGTCAACAAGGTCATCCTCATCGGCAACCTGGGCAAGGACCCGGAAATCCGCACGCTGAA 29267 Query 9179 GAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAAGGACAAGGC 9238 ||||||||| || |||| | || |||| ||| | || | | |||||||| Sbjct 29268 CAGCGGCGACCGCGTCGCCAACCTGCGCATCGCCACGTCGGAGCAATGGCGCGACAAGGC 29327 Query 9239 GAGCGGCGAGTTCAAGGAAGTGACCGAGTGGCAC-CG--CGTCGCTTTCTTCGGCCGCCT 9295 | ||||||| ||||||| ||||||||||||| || |||| |||| || | | Sbjct 29328 CACCGGCGAGCGCAAGGAAAAGACCGAGTGGCACGCGGTCGTCATTTTCAACGAGAACAT 29387 Query 9296 CGCCGAGATCGTCGACGAGCACCTTCGCAAGGGCGCATCGGTCTACATCGAGGG 9349 || | || | | ||| | |||| |||||| | | || ||||||||||| Sbjct 29388 CGTCAAGGTGGCCGAGAACTACCTGAAGAAGGGCTCGACCGTTTACATCGAGGG 29441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200558775701160