Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq731 138 3e-28 >seq731 Length=2494 Score = 138 bits (152), Expect = 3e-28 Identities = 336/509 (66%), Gaps = 0/509 (0%) Strand=Plus/Plus Query 4415 TCGACTGCTTTCTGTACATCCCCGCAGCATTCGAGCAAGGCGAGTGTTGAGCGCACGGTT 4474 ||||| || ||||| || || | || || |||| ||||| || |||||| || Sbjct 437 TCGACGGCGTTCTGCACGACCTTGGGGCTATCCAGCAGCGCGAGCGTGTCGCGCACCGTG 496 Query 4475 GCAACTTTGCAGTTGAAAATCATCGCGACCTGATCTTCACCGCGGCCAAGTGCCATCAGC 4534 || || ||||||| | || | |||| ||| || || || || || |||| | Sbjct 497 GCGACGGAGCAGTTGTAGATGACGGCGATCTGGTCCTCGCCCTTTCCCAGGGCCAGGTGT 556 Query 4535 TGCCGCATCTTCTCGGCGCGGCCTAGTGGCGTGTCTGCGCGACGGTGTTCGTTTTCGCTG 4594 | ||||| ||||||||||| |||||||| | || || ||| ||||| |||||| Sbjct 557 CGGCGCATTTTCTCGGCGCGTCCTAGTGGGGCATCGGCAGTGCGGGCCTCGTTCTCGCTG 616 Query 4595 ACGATCGCATCGAGTGCTTGCTCGCGCTTGCCTTTGAAAACGACTGCCGGCACCTGGCGA 4654 | || || || | || | |||||||||||| | | | ||||| | || || | || Sbjct 617 GCAATGGCGTCTAAGGCGTTCTCGCGCTTGCCGTGGTATACGACGCCGGGAACGAGCCGT 676 Query 4655 GGTGCGATGCCACGTTCCTGTCGCCATATATTCGCTAGTCGACAGGCCTTGACGCGCTGC 4714 || | ||||| || ||||| | || || || ||||||||||||||| Sbjct 677 TCGGCAACACCACGCGCCCTGCGCCACTTGTTGGCGAGCATGGCGGCCTTGACGCGCTGG 736 Query 4715 CGGCCGAGTACGACTTCGACATCGCCGGTCTCGGGATTTTTCGAGATCTCGATTGGCATC 4774 || |||| || ||||| ||||| ||||||||||| || || | || || | Sbjct 737 CGTCCGAAAACAACTTCTGTCTCGCCTGTCTCGGGATTCTTGGATACGCTGACAGGTTCC 796 Query 4775 ACGATGCCTTGATAGTCGATGTTGTGCGCCATCATTTCGTCGACAGGTAGATGAACGCGA 4834 | | ||| || |||||||| ||| | ||||| ||||| || || ||||| || || Sbjct 797 AGTACGCCCTGGTAGTCGATATTGCGGGCCATGGCCTCGTCCACCGGCAGATGCACCCGG 856 Query 4835 TCATCGTAAAGAGGGGACGTCTTGTCCGTTACGAGTACCAGCTTTTCCGGATCGAAAAAC 4894 ||| || |||||| | | ||| || ||||| ||||| | || ||||| Sbjct 857 GGATCATAGAGAGGGCTGGATTCGTCGGTGACGAGGGTTAGCTTGGCGGGGTCGAAGGTG 916 Query 4895 AACAGATTGGTTTTGCCAGCAGCGCCGTA 4923 | ||||||| | | ||| | |||||||| Sbjct 917 AGCAGATTGCTCTGGCCGTCCGCGCCGTA 945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127542858566760