Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq547 141 2e-28 seq29 100 7e-16 >seq547 Length=3469 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || |||||||| ||||||||||||| ||||||||||| | ||| Sbjct 1601 CGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTT 1660 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| || || |||||||| ||||| ||||| || || || || |||||| Sbjct 1661 CTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCT 1720 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| || ||| |||| ||||| | || ||| || || | Sbjct 1721 TCTTTGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGA 1780 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || | ||| || ||||||||||| Sbjct 1781 GTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTG 1818 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || || ||||| | || || |||| | ||| Sbjct 1373 CGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTT 1432 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| || |||||||| || || || ||||| || ||||| ||| || ||| Sbjct 1433 CTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCT 1492 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||||||| ||| ||| || | || || | | ||| || || | Sbjct 1493 TCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGA 1552 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || |||||||| || Sbjct 1553 GTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTG 1590 >seq29 Length=268433 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || || ||||| | || || |||| | ||| Sbjct 198322 CGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTT 198381 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| || |||||||| || || || ||||| || ||||| ||| || ||| Sbjct 198382 CTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCT 198441 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||||||| ||| ||| || | || || | | ||| || || | Sbjct 198442 TCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGA 198501 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || |||||||| || Sbjct 198502 GTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTG 198539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178894260071270