Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq641 111 2e-19 >seq641 Length=2967 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 46380 GCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGT 46439 |||| | ||| || | || |||||||| ||||||||||| || | || |||||| ||| Sbjct 497 GCAAAATCAGGTGGAGCGTGCTCTCCTTCTGGATATTGTAATCAGCAAGCGTGCGCCCGT 438 Query 46440 CGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGT 46499 | || | | || || ||||| | || ||||||||||| | || | || ||||||| Sbjct 437 CTTCCAACAGCACTCCAGCGAAGACCAGGCGCTGCTGGTGAGGAGGGATGCCTTCCTTGT 378 Query 46500 CCATGATCTTCTTCTTGA--GCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | ||||||| ||| | |||||| | || ||||||| ||||| || | | || Sbjct 377 CTTGGATCTTCGCCTTCACGGCGTCG--ATCGAATCGCTCGGCTCCACCTCAAGGGCAAT 320 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCACAAACA 46605 ||| ||||| ||||| || || || ||||| |||| | |||||| || Sbjct 319 GGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCA--TCGCACAAGCA 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565225611481200