Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 8e-12 >seq5 Length=1449561 Score = 86.0 bits (94), Expect = 8e-12 Identities = 263/397 (66%), Gaps = 21/397 (5%) Strand=Plus/Plus Query 111596 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGA 111655 ||| ||| || ||| ||||| | | || ||||| || || | ||||| ||||| || Sbjct 1211990 TGTATTGTTG-AAAGACCACAACATCTTTTTATGCGTGTTGCTGTTGGTATTCATGGAGA 1212048 Query 111656 AGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCC----GTGGTATGTTCATCC 111711 ||||||||| ||||| | || ||||| || ||||| | |||| | | ||| Sbjct 1212049 AGATATTGAATCTGTACTTGAAACATATAACTGTATGTCTCAAAAATGGTTTTTACAT-- 1212106 Query 111712 ACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCC 111771 ||| ||||||| | | || || || ||||||| | ||| |||| ||||| Sbjct 1212107 --GCATCACCAACATTATATAATGCAGGAACACCAAAAGGACAATTGTCATCATGTTT-T 1212163 Query 111772 TTATTGCAAACAA----GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGT 111827 ||||| ||||| ||| |||||||| | || ||||| | ||||| | | ||| Sbjct 1212164 TTATT---AACAATGGTGGATGATTCAATAGAAGGTATTTATGATACTCTTAAAAATTGT 1212220 Query 111828 GCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAAC 111887 || ||| ||||| | || ||||| | || | | || || | | ||| || Sbjct 1212221 GCTATAATTTCAAAAGGTGCAGGTGGAGTTGGTCTAAGTGTTAATAATATTCGTGCC-AC 1212279 Query 111888 AAG-TCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTA-TTCCAATGCTTCGCG 111945 | | ||| |||||| || |||||||| ||| |||| |||| |||| ||| | || | Sbjct 1212280 AGGATCTTTTATTAGTGGAACAAATGGAATTTCAAATGG-ATTAGTTCCTATGTTACGAG 1212338 Query 111946 TATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGG 111982 ||||||| | || || || ||||| | |||| ||| Sbjct 1212339 TATTTAATGATACTGCTCGTTATGTTGATCAAGGTGG 1212375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620728355703200