Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq15 122 1e-22 >seq15 Length=622252 Score = 122 bits (134), Expect = 1e-22 Identities = 303/456 (66%), Gaps = 17/456 (4%) Strand=Plus/Minus Query 110695 AGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC- 110753 || |||||||| ||||| ||||| | ||||||||||| | ||| | || | | ||| Sbjct 203579 AGATCCAAAAATTCCATAATATCTGCATGCCATGGTTCCAAATAAATTGCAAAAGCTCCA 203520 Query 110754 -----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGC 110808 |||| | ||| || | |||||| | ||| || ||||| || || | | Sbjct 203519 GGTCTCTTATTTCCACCT---TGATCAACATATCTTGCAGTATTGTTGAAAACTCTCAAC 203463 Query 110809 ATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGA 110868 || || | | ||||| ||| ||||| || || | ||| || |||||||||| Sbjct 203462 ATTGGTACCAATCCATTTGATGTTCCATTAGTTCCACCAATAAATGATCCATTGGCACGA 203403 Query 110869 ATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTG 110928 || || | || | |||||||| || || | || |||| ||||| | | | Sbjct 203402 ATACAATGAACATTTAATCCAATACCTCCAGCAGATTTTGAAATTAAAGCACATTGTTTC 203343 Query 110929 AGTGTACCATAAATACCATCAATCGAATCT---GCC-TTGTTGGCAATTAGAAAGCAAGA 110984 | |||| ||||||| || ||||| |||||| ||| ||||| ||| ||||| || || Sbjct 203342 AATGTATCATAAATCCCTTCAATAGAATCTCCAGCCATTGTT---AATAAGAAA-CATGA 203287 Query 110985 AGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAG 111044 ||||| || ||||||| ||||| ||||| || ||||| || | ||||| | ||| Sbjct 203286 AGACAATTGTGGACGAGTTGTTCCTGCATTAAATAGTGTTGGAGAAGCATGTGTAAACCA 203227 Query 111045 ACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACC 111104 || ||||| |||||||| |||| | || | ||||| || |||||||| Sbjct 203226 TTTCTGTGACATAAAATTGTATGTTTCGATAACTGAATCAATATCTTCTCCATGAATACC 203167 Query 111105 AATGGCAACTCGCATGAACATATATTGAGGCGTTTC 111140 || ||||||| ||| | | || ||| || |||| Sbjct 203166 AACAGCAACTCTCATAAGTAAATGTTGTGGTCTTTC 203131 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 || ||||| ||||| ||| | ||||||||||| ||||| || |||||| |||||| Sbjct 204767 GATTGAGATTGATCAATGTAAGCTCCACGATCAGCAGCCATCTCAATGATATCCTTTTGA 204708 Query 109567 CTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCA-CGATGTT 109625 ||||||||| |||||||| || | | |||||||| || || |||| |||| || Sbjct 204707 GAAATTTCCCAAACAGTCTTATAAAGTTCCTTGATATGTGTTGGTAT-TCCAGCGATATT 204649 Query 109626 TTGAATAGAGCCA 109638 |||||| || ||| Sbjct 204648 TTGAATTGAACCA 204636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588962674418000