Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-14 seq11 87.8 2e-12 >seq5 Length=1449561 Score = 95.1 bits (104), Expect = 1e-14 Identities = 287/437 (66%), Gaps = 15/437 (3%) Strand=Plus/Minus Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGC 106944 ||||| || |||||||| |||| ||| | || | | ||| |||| | ||| | Sbjct 1212429 ATATCTGCATGCCATGGTTCAATATAAATAGCAAATGCTCCTGGTCTTTT-ATTTCCACC 1212371 Query 106945 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA-TAATACCATCTG 107003 ||||| ||||| || || || | |||||||| || | ||| |||| |||| |||| || Sbjct 1212370 TTGATCAACATAACGAGCAGTATCATTAAATACTCGTAACATAGGAACTAAT-CCATTTG 1212312 Query 107004 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCC 107063 | |||||||| || | |||| |||| |||| | | || || | | | Sbjct 1212311 AAATTCCATTTGTTCCACTAATAAAAGATCCTGTGGCACGAATATTATTAACACTTAGAC 1212252 Query 107064 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 107123 ||| || || || | ||||| ||| ||||| | ||||||| |||| ||||| | Sbjct 1212251 CAACTCCACCTGCACCTTTTGAAATTATAGCACAATTTTTAAGAGTATCATAAATACCTT 1212192 Query 107124 TGATTGAGTCCTCC----TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT 107179 ||||| || ||| ||||| |||| || || |||| || | ||||| Sbjct 1212191 CTATTGAATCATCCACCATTGTTA---ATAAAAAA-CATGATGACAATTGTCCTTTTGGT 1212136 Query 107180 GTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCG 107239 || || ||||| | | ||||||| ||| || | ||| ||| ||||| || Sbjct 1212135 GTTCCTGCATTATATAATGTTGGTGATGCATGTAAAAACCATTTTTGAGACATACAGTTA 1212076 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 ||||| || | ||||| ||||| ||||| || || || || | || ||||||||||| Sbjct 1212075 TATGTTTCAAGTACAGATTCAATATCTTCTCCATGAATACCAACAGCAACACGCATAAAA 1212016 Query 107300 ATGTATTGGGGTGTTTC 107316 | | ||| ||| |||| Sbjct 1212015 AGATGTTGTGGTCTTTC 1211999 >seq11 Length=1024817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 163936 TACGAGGGAGCTACGGTTCTTGAAGCACAAAAGGGTGCATACTATACTCCAATTACTGCT 163995 || ||||||||||| ||| ||||| || || ||| || || |||||| || | Sbjct 441788 TATGAGGGAGCTACTGTTATTGAACCAATAAGAGGTTTTTATAATGAACCAATTGCTACA 441847 Query 163996 CTTGATTTTGAAGCACTGTATCCATCAATTATGATGGCACACAATCTATGCTATTCGTCA 164055 |||||||||| |||| ||||||||||||||||| ||||| ||||| || ||| | ||| Sbjct 441848 CTTGATTTTGCTTCACTATATCCATCAATTATGATTGCACATAATCTTTGTTATACTTCA 441907 Query 164056 T 164056 | Sbjct 441908 T 441908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589967451684400