Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq17 190 2e-43 >seq17 Length=497611 Score = 190 bits (210), Expect = 2e-43 Identities = 463/693 (67%), Gaps = 10/693 (1%) Strand=Plus/Minus Query 154418 TAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAA 154477 ||||||||| ||||| || || ||| ||||| | || || |||||||||||||| Sbjct 409675 TAAAGATTTGTCATTGGTTCATTCAATGATTCCATTAGGTTCATGTACAATGAAATTAAA 409616 Query 154478 TGCAGCAGCAGAACTAATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATAC 154537 ||| ||||| ||| | | || | | ||| || |||| | |||||| | Sbjct 409615 TGCCGCAGCTGAAATGTTACCACTTACTTGGCCTTCACTTTCTAATATTCATCCATTTGT 409556 Query 154538 ACCTATGATACAGACCATGGGTTA--TCAGAAAATTATAGATGACTTACAGAAATGGTTA 154595 || || |||| | | || || | || | ||| || |||| || | |||||| | Sbjct 409555 TCCAATTGAACAGGCAAAAGGATACATGAGGATATT-TA-ATGATTTGGAAAAATGGCTT 409498 Query 154596 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 154655 ||||| | || || | |||| | || | ||||| ||| ||| || | |||||| Sbjct 409497 TGTGAGGTTACTGGATATGATAACTTTTCCCTCCAACCAAACAGTGGAGCAAATGGTGAG 409438 Query 154656 TATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAAT 154715 ||||| ||| | ||||| || ||| ||| | | || || | || || ||||| Sbjct 409437 TATGCTGGATTATTAGCCATAAAAGGATATCTTAAATCTATTGGTCAAGAAAACAGAAAG 409378 Query 154716 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGG 154775 |||| | || ||| ||||| |||||||| ||||| ||| ||| ||||| Sbjct 409377 ATATGCCTTATTCCATCATCAGCTCATGGAACCAATCCAGCTTCAGCTTCAATGGCTAAT 409318 Query 154776 ATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAG 154835 | || || || || | | |||| |||| || || | |||||| || Sbjct 409317 TTCAAGGTAGTTCCAGTTGAATCTGATAGACATGGAAATATTAATTATAAAGATTTATCA 409258 Query 154836 AAGAAAGCAATCATGAATACATT--TGAACTGTCATG-TATTATGATTACATACCCATCT 154892 | |||||| | | | |||| ||| || | || ||||||| |||| || || || Sbjct 409257 ATGAAAGC--TGAAAAGTACAAGGATGATCT-TGGTGCTATTATGGTTACCTATCCTTCA 409201 Query 154893 ACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGT 154952 |||||||| || ||||| | || ||| | | |||| | |||||||| ||||| Sbjct 409200 ACACATGGAGTTTTTGAGAGTAGTATTGTTGATGTTTGTAGTAAGGTTCATGAAAATGGA 409141 Query 154953 GGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGT 155012 || || ||||||||||||||||| ||| | ||||| || |||||| || | ||| || Sbjct 409140 GGACAAGTATATCTTGATGGAGCCAATTTCAATGCTCAAGTAGGATTATGTAGACCTGGT 409081 Query 155013 GAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGA 155072 || |||||| ||||| | ||| |||| | ||||||||||||||||| ||||||||| Sbjct 409080 GATTATGGTAGTGATGTTTCACATTTAAATCTTCATAAAACATTCTGTATCCCACATGGA 409021 Query 155073 GGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105 ||||| ||||| || | || || || |||||| Sbjct 409020 GGTGGTGGTCCAGGAATGGGACCAATTGGTGTA 408988 Score = 113 bits (124), Expect = 5e-20 Identities = 222/325 (68%), Gaps = 15/325 (5%) Strand=Plus/Minus Query 153740 GGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGG 153799 |||| ||| |||||||| || || ||||| ||||| | ||| | || |||||||| Sbjct 410395 GGGAGCTGAAATTGCTGTTGGATGTGCTCAAAGATTTGGAACTCCACTTGGTTATGGAGG 410336 Query 153800 TCCTCATGCTGCATTCTT----TGC---AACAACA---GACAAGTA----TAAGA-GAAA 153844 || ||||| | |||| | ||| || || | || || | || | | | Sbjct 410335 ACCACATGCAGGATTCATGTCATGCGTTAAAAATATTGGAAAAATTCCATTATCACGTAT 410276 Query 153845 GATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATT 153904 ||| ||||| ||||||||||| || |||| || | || |||||||| | | || Sbjct 410275 GATGCCTGGAAGAATTGTAGGAGTATCTAAAGATTGTCATGGAAATAAAGCCTTGCGTTT 410216 Query 153905 AGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCAC 153964 ||| || || || | || || ||||| || ||||| ||||| ||| ||| ||||| || Sbjct 410215 AGCTCTCCAAACACGTGAACAACATATTAGAAGAGATAAAGCTACCTCTAATATCTGTAC 410156 Query 153965 AGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGG 154024 ||| || ||||| | || ||||| ||| | | ||||| | |||||||| | || | Sbjct 410155 AGCACAAGCACTCCCAGCAAATATTGCTGCAATGTATGCTGTCTATCATGGACCTCATAG 410096 Query 154025 ACTACATGCTATAGCAAGAAGAATT 154049 | |||| || || ||||||| |||| Sbjct 410095 ATTACAAGCGATTGCAAGAAAAATT 410071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579199695310400