Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq17 170 2e-37 >seq17 Length=497611 Score = 170 bits (188), Expect = 2e-37 Identities = 458/692 (66%), Gaps = 10/692 (1%) Strand=Plus/Minus Query 159094 AAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAAC 159153 |||||||| ||||| || || ||| ||||| | ||| ||||| |||||| |||| Sbjct 409674 AAAGATTTGTCATTGGTTCATTCAATGATTCCATTAGGTTCATGTACAATGAAATTAAAT 409615 Query 159154 GCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACA 159213 || ||| | ||| || | || | | ||| || |||| | |||||| | Sbjct 409614 GCCGCAGCTGAAATGTTACCACTTACTTGGCCTTCACTTTCTAATATTCATCCATTTGTT 409555 Query 159214 CCTATGATACAGACCATGGGTTA--TCAAAAAATTATAGATGACTTACAGAAATGGTTAT 159271 || || |||| | | || || | | | ||| || |||| || | |||||| | | Sbjct 409554 CCAATTGAACAGGCAAAAGGATACATGAGGATATT-TA-ATGATTTGGAAAAATGGCTTT 409497 Query 159272 GTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGT 159331 |||| | || || | |||| | || | ||||| ||| ||| || | ||||||| Sbjct 409496 GTGAGGTTACTGGATATGATAACTTTTCCCTCCAACCAAACAGTGGAGCAAATGGTGAGT 409437 Query 159332 ATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATG 159391 |||| ||| | ||||| || ||| ||| | | || || | || || ||||| Sbjct 409436 ATGCTGGATTATTAGCCATAAAAGGATATCTTAAATCTATTGGTCAAGAAAACAGAAAGA 409377 Query 159392 TATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGA 159451 |||| | || ||| ||||| |||||||| ||||| || ||||| ||||| Sbjct 409376 TATGCCTTATTCCATCATCAGCTCATGGAACCAATCCAGCTTCAGCTTCAATGGCTAATT 409317 Query 159452 TGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGA 159511 | || || || || | | |||| |||| || || | |||||| || | Sbjct 409316 TCAAGGTAGTTCCAGTTGAATCTGATAGACATGGAAATATTAATTATAAAGATTTATCAA 409257 Query 159512 AGAAAGCAATCATGAATACATT--TGAACTGTCATG-TATTATGATTACATATCCATCTA 159568 |||||| | | | |||| ||| || | || ||||||| |||| ||||| || | Sbjct 409256 TGAAAGC--TGAAAAGTACAAGGATGATCT-TGGTGCTATTATGGTTACCTATCCTTCAA 409200 Query 159569 CACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTG 159628 ||||||| || ||||| | | || | | |||| | |||||||| ||||| | Sbjct 409199 CACATGGAGTTTTTGAGAGTAGTATTGTTGATGTTTGTAGTAAGGTTCATGAAAATGGAG 409140 Query 159629 GTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTG 159688 | || |||||||||||||| || ||| | ||||| || ||||| || | ||| ||| Sbjct 409139 GACAAGTATATCTTGATGGAGCCAATTTCAATGCTCAAGTAGGATTATGTAGACCTGGTG 409080 Query 159689 ACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAG 159748 | |||||| ||||| | ||| |||| | ||||| ||||||||||| |||||||||| Sbjct 409079 ATTATGGTAGTGATGTTTCACATTTAAATCTTCATAAAACATTCTGTATCCCACATGGAG 409020 Query 159749 GTGGAGGTCCTGGCGTAGGTCCTATTGGTGTA 159780 |||| ||||| || | || || ||||||||| Sbjct 409019 GTGGTGGTCCAGGAATGGGACCAATTGGTGTA 408988 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 158520 GATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATT 158579 ||| ||||| ||||||||||| || |||| | | || |||||||| | | || Sbjct 410275 GATGCCTGGAAGAATTGTAGGAGTATCTAAAGATTGTCATGGAAATAAAGCCTTGCGTTT 410216 Query 158580 AGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCAC 158639 ||| || || || | || || ||||| |||||||| ||||| ||| ||| ||||| || Sbjct 410215 AGCTCTCCAAACACGTGAACAACATATTAGAAGAGATAAAGCTACCTCTAATATCTGTAC 410156 Query 158640 AGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGG 158699 |||||||||||| | || ||||| ||| | ||||| | |||||||| | || | Sbjct 410155 AGCACAAGCACTCCCAGCAAATATTGCTGCAATGTATGCTGTCTATCATGGACCTCATAG 410096 Query 158700 ACTACATGCTATAGCAAGAAGAATT 158724 | |||| || || ||||||| |||| Sbjct 410095 ATTACAAGCGATTGCAAGAAAAATT 410071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588037895341600