Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq547 185 2e-41
seq29 185 2e-41
seq82 102 2e-16
seq641 100 6e-16
>seq547
Length=3469
Score = 185 bits (204), Expect = 2e-41
Identities = 167/210 (80%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | |||||| || || |||||||||||||| ||||| | ||||||||| ||||||||
Sbjct 1384 AACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTC 1443
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| ||||| || || || ||||| ||||||||||||||||| || ||||| || |||||
Sbjct 1444 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTG 1503
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| ||| ||||||||| ||||| || || ||| ||| || ||||| || | |||||
Sbjct 1504 AATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTT 1563
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || ||||| || || || | |||||
Sbjct 1564 TCCAGTTAAAGTCTTAACAAAAATCTGCAT 1593
Score = 168 bits (186), Expect = 1e-36
Identities = 164/211 (78%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| || || ||||| ||||| ||||| || ||||| || | |||||||| ||||||||
Sbjct 1612 AACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTC 1671
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| || || || || |||||||| |||||||| ||||| || || ||||||||||||||
Sbjct 1672 AAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTG 1731
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || |||||||| || || ||||| || ||| |||||||| |||| || ||
Sbjct 1732 AATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATTGTTTT 1791
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
||| || ||||| || || || | |||||||
Sbjct 1792 TCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822
Score = 116 bits (128), Expect = 8e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
||||||| ||||| | || |||||||||||| ||||| ||||| || || || || ||
Sbjct 2113 TACCTGCAAAGATTAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGGATCTTAG 2172
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
||||||||| ||||| ||||| ||| || |||||||| || | ||||| |||||||
Sbjct 2173 CCTTGACGTTATCAATAGTGTCTGAAGGCTCAACTTCAAGCGTTATAGTCTTCCCTGTCA 2232
Query 195119 AAGTTTTTACGAACACTTGCAT 195140
|||| || || || | ||||||
Sbjct 2233 AAGTCTTAACAAAGATTTGCAT 2254
>seq29
Length=268433
Score = 185 bits (204), Expect = 2e-41
Identities = 167/210 (80%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | |||||| || || |||||||||||||| ||||| | ||||||||| ||||||||
Sbjct 198333 AACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTC 198392
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| ||||| || || || ||||| ||||||||||||||||| || ||||| || |||||
Sbjct 198393 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTG 198452
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| ||| ||||||||| ||||| || || ||| ||| || ||||| || | |||||
Sbjct 198453 AATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTT 198512
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || ||||| || || || | |||||
Sbjct 198513 TCCAGTTAAAGTCTTAACAAAAATCTGCAT 198542
>seq82
Length=59906
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059
||| || ||||| || ||||||||||| |||||||| ||||| || ||||| |||||
Sbjct 47881 ACCAGCAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGA 47822
Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119
|||||| || ||||| || || || || |||||||| || | || || || || |
Sbjct 47821 CTTGACATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAG 47762
Query 195120 AGTTTTTACGAACACTTGCAT 195140
|||||| ||||| | ||||||
Sbjct 47761 AGTTTTGACGAAGATTTGCAT 47741
>seq641
Length=2967
Score = 100 bits (110), Expect = 6e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
||||| ||||| || ||| ||| || || ||||||||||| ||||| || | ||| ||
Sbjct 496 CAAAATCAGGTGGAGCGTGCTCTCCTTCTGGATATTGTAATCAGCAAGCGTGCGCCCGTC 437
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
||| | | || || ||||||| || || || |||| ||||| |||||||| |||||
Sbjct 436 TTCCAACAGCACTCCAGCGAAGACCAGGCGCTGCTGGTGAGGAGGGATGCCTTCCTTGTC 377
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
||| || || ||| ||| || || | || ||||| ||||||| || ||
Sbjct 376 TTGGATCTTCGCCTTCACGGCGTCGATCGAATCGCTCGGCTCCACCTCAAGGGCAATGGT 317
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || |||| || || ||||| | |||||
Sbjct 316 CTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109455870428270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |