Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq547 185 2e-41 seq29 185 2e-41 seq82 102 2e-16 seq641 100 6e-16 >seq547 Length=3469 Score = 185 bits (204), Expect = 2e-41 Identities = 167/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || || |||||||||||||| ||||| | ||||||||| |||||||| Sbjct 1384 AACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTC 1443 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || || || ||||| ||||||||||||||||| || ||||| || ||||| Sbjct 1444 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTG 1503 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||||||||| ||||| || || ||| ||| || ||||| || | ||||| Sbjct 1504 AATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTT 1563 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || || || | ||||| Sbjct 1564 TCCAGTTAAAGTCTTAACAAAAATCTGCAT 1593 Score = 168 bits (186), Expect = 1e-36 Identities = 164/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || ||||| ||||| ||||| || ||||| || | |||||||| |||||||| Sbjct 1612 AACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTC 1671 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || || |||||||| |||||||| ||||| || || |||||||||||||| Sbjct 1672 AAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTG 1731 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||||| || || ||||| || ||| |||||||| |||| || || Sbjct 1732 AATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATTGTTTT 1791 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || ||||| || || || | ||||||| Sbjct 1792 TCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 Score = 116 bits (128), Expect = 8e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| ||||| | || |||||||||||| ||||| ||||| || || || || || Sbjct 2113 TACCTGCAAAGATTAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGGATCTTAG 2172 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||||||| ||||| ||||| ||| || |||||||| || | ||||| ||||||| Sbjct 2173 CCTTGACGTTATCAATAGTGTCTGAAGGCTCAACTTCAAGCGTTATAGTCTTCCCTGTCA 2232 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 |||| || || || | |||||| Sbjct 2233 AAGTCTTAACAAAGATTTGCAT 2254 >seq29 Length=268433 Score = 185 bits (204), Expect = 2e-41 Identities = 167/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || || |||||||||||||| ||||| | ||||||||| |||||||| Sbjct 198333 AACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTC 198392 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || || || ||||| ||||||||||||||||| || ||||| || ||||| Sbjct 198393 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTG 198452 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||||||||| ||||| || || ||| ||| || ||||| || | ||||| Sbjct 198453 AATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTT 198512 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || || || | ||||| Sbjct 198513 TCCAGTTAAAGTCTTAACAAAAATCTGCAT 198542 >seq82 Length=59906 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| || ||||| || ||||||||||| |||||||| ||||| || ||||| ||||| Sbjct 47881 ACCAGCAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGA 47822 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||| || ||||| || || || || |||||||| || | || || || || | Sbjct 47821 CTTGACATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAG 47762 Query 195120 AGTTTTTACGAACACTTGCAT 195140 |||||| ||||| | |||||| Sbjct 47761 AGTTTTGACGAAGATTTGCAT 47741 >seq641 Length=2967 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||||| ||||| || ||| ||| || || ||||||||||| ||||| || | ||| || Sbjct 496 CAAAATCAGGTGGAGCGTGCTCTCCTTCTGGATATTGTAATCAGCAAGCGTGCGCCCGTC 437 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | | || || ||||||| || || || |||| ||||| |||||||| ||||| Sbjct 436 TTCCAACAGCACTCCAGCGAAGACCAGGCGCTGCTGGTGAGGAGGGATGCCTTCCTTGTC 377 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || ||| ||| || || | || ||||| ||||||| || || Sbjct 376 TTGGATCTTCGCCTTCACGGCGTCGATCGAATCGCTCGGCTCCACCTCAAGGGCAATGGT 317 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||| || || ||||| | ||||| Sbjct 316 CTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109455870428270