Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq547 102 5e-17 seq29 102 5e-17 >seq547 Length=3469 Score = 102 bits (112), Expect = 5e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || |||||| ||||| ||||| || ||||| ||| | |||| || Sbjct 1384 AACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTC 1443 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || ||||| ||||| || || ||||| |||||| | || | || ||||| || Sbjct 1444 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTG 1503 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| |||||| | || | || | ||||| || | || || || || Sbjct 1504 AATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTT 1563 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | |||||| ||||| ||||||||| Sbjct 1564 TCCAGTTAAAGTCTTAACAAAAATCTGCATA 1594 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| || || ||| | |||| || || |||||||||||||| Sbjct 1631 TCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAG 1690 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| || ||| | || | || || ||||| |||||| ||||||| Sbjct 1691 ATAAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTTGGATTTGACGTTG 1750 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||||| || | || || |||||||| || | |||||| ||| Sbjct 1751 TCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACA 1810 Query 34971 AAGATCTGCAT 34981 || || ||||| Sbjct 1811 AAAATTTGCAT 1821 >seq29 Length=268433 Score = 102 bits (112), Expect = 5e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || |||||| ||||| ||||| || ||||| ||| | |||| || Sbjct 198333 AACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTC 198392 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || ||||| ||||| || || ||||| |||||| | || | || ||||| || Sbjct 198393 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTG 198452 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| |||||| | || | || | ||||| || | || || || || Sbjct 198453 AATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTT 198512 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | |||||| ||||| ||||||||| Sbjct 198513 TCCAGTTAAAGTCTTAACAAAAATCTGCATA 198543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324626438785680