Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq24 116 5e-21 seq5 107 3e-18 >seq24 Length=311514 Score = 116 bits (128), Expect = 5e-21 Identities = 317/478 (66%), Gaps = 17/478 (4%) Strand=Plus/Plus Query 104826 TGCTTACAACaaaaaaaaTAGTTTACGCCAAT--ATTCTTAAAGAATTATTATGGGTGAT 104883 || |||||||||| | || | ||| | || ||| || ||||||| || ||| | || Sbjct 228392 TGATTACAACAAAGAGAACATTTT--GGAAAGGGATTGTTGAAGAATTGTTGTGGTTTAT 228449 Query 104884 GAAAGGTTTAACAAATTCTAACTTGTTAAATGAAATTGGTGTTAAAGTATGGAATGATAA 104943 ||| || ||| | || | || | ||||| ||||| || | ||| | ||| Sbjct 228450 TTCTGGTAGTACTAATGCGAAGGTTTTGACTGAAAAGGGTGTCAAGATTTGGGAACCTAA 228509 Query 104944 TGGTTCACGTAAGTTTTTAGATTCTTGTGGATTTCACTTTCGAAAAGAAGGTGATTTAGG 105003 |||| | | || || ||| | ||||||| ||| ||| || |||||||| Sbjct 228510 TGGTAGTAGACAATTCTTGGATAATCTTGGATTTACAGAACGACCAGAGGGAGATTTAGG 228569 Query 105004 ACCAATTTATGGATTTCAATGGAGACATGCTGGAGCTCAATAT-ATCGACTGTGATACCG 105062 ||| |||| |||||||||||||||||| ||||||| ||||| | || | |||| ||| Sbjct 228570 TCCAGTTTACGGATTTCAATGGAGACATTTTGGAGCTAAATATGAAGGAGT-TGATGCCG 228628 Query 105063 ACTATACCGGCCAAGGTATAGACCAATTAAGTCAAGTTATAGAAACTATAAAAAATAACC 105122 | || || || | || | || ||||| ||| ||| | || || |||||||||| Sbjct 228629 ATTACACAGGAAAGGGAGTTGATCAATTGGCTCAGGTTGTTGATCAAATTAAAAATAACC 228688 Query 105123 CCGGGTGTCGAAGAATAATTATAGATAGTTGGAATGTGTCACAATTATC-AGAT---ATG 105178 | | | |||||||||||| || |||||| || | ||| ||| ||| Sbjct 228689 CAGATTCTCGAAGAATAATCTTATCAGCATGGAATCCTTC----TGATCTTGATTTAATG 228744 Query 105179 GCTCTTCCACCGTGTCATTGTTTGGTACAATTTTACATTAGAAATAAAATTTATTTAGAT 105238 | ||| || || || ||| |||||| |||||||| || | || | | ||| Sbjct 228745 GTTCTCCCTCCATGCCATACTTTGGTTCAATTTTATGTTCAAGATGGA---GAGTTAAGC 228801 Query 105239 TGTCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGGTT 105296 ||||||||||||||| | || |||| ||||| | || || || | ||||||| || Sbjct 228802 TGTCAATTGTATCAACGCAGTGGAGATGTAGGACTTGGAGTTCCTTTCAATATTGCTT 228859 >seq5 Length=1449561 Score = 107 bits (118), Expect = 3e-18 Identities = 124/163 (76%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 126584 TCAATTACGTATACCAGAAATTGGAGACAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAA 126642 ||||||| | ||||| |||||||||| |||||| |||| || |||| | |||| | | Sbjct 1209448 TCAATTAGAT-TACCACAAATTGGAGATAAATTTGCTTCTAGACATGGTCAAAAAGGTAC 1209506 Query 126643 CTTGTGGTATGATTTATGCACAAGAAGATATGCCGTTTACACAATCAGGTATGACCCCCG 126702 | || |||||||| ||| |||||||||||||| |||||| || |||| | | || | Sbjct 1209507 CATG-GGTATGATGTATCGCCAAGAAGATATGCCATTTACAAAAGAAGGTTTATCACCAG 1209565 Query 126703 ATATTATAATTAATCCAAATTGTATACCGTCAAGAATGACCAT 126745 ||||||| |||||||| || | |||| || ||||||| || Sbjct 1209566 ATATTATTATTAATCCTCATGCTGTACCATCTCGAATGACAAT 1209608 Score = 104 bits (114), Expect = 3e-17 Identities = 171/242 (71%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 126954 GGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCATGCTAGAAGT 127013 || |||| || ||||| |||||||||||||| |||||||||||||||||| | Sbjct 1297264 GGACCAATTTATTATCAAAAACTTAAACATATGGTATTGGATAAAATGCATGCTAGA--T 1297207 Query 127014 CATG--GTCAAGTAACAACATTACATCGTCAACCAAACTGT-GGTCGTTCCCAAGGTGGT 127070 || | ||| || | ||| |||||||| | ||| ||| | | | | |||| Sbjct 1297206 CAAGAGGTCCTGTTGCTGTTTTAACACGTCAACCTA-CTGAAGGTAGAGCACGTGATGGT 1297148 Query 127071 GGATTAAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGAGCCACACAATTT 127130 || |||||||| ||||||||||||| ||||||| || | | | ||||||| || || Sbjct 1297147 GGTTTAAGATTAGGAGAAATGGAAAGAGATTGTCTTATAGCTTATGGAGCATCAATGCTT 1297088 Query 127131 TTAAATGAAAGAATGTTTTTATGTTCAGATCCTTTTCAAATTGATGTGTGTACAAATTGT 127190 |||| || ||| | | ||| ||| |||| |||||| ||||||| ||| || ||| Sbjct 1297087 TTAATGGAGAGATTAATGGTATCTTCTGATCAATTTCAAGTTGATGTTTGTTCAGTATGT 1297028 Query 127191 GG 127192 || Sbjct 1297027 GG 1297026 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 126103 ATTATCCTCAAAAACCACTTGTTACAACCGATATTGCAGAATTTAATG-GTCTAAATGAA 126161 ||||||| ||||||||| | |||||||| | | | | ||| || | | |||||| Sbjct 1208930 ATTATCCACAAAAACCATTAGTTACAACACGT-TCGATGTCTTTTTTGAGATTTAATGAA 1208988 Query 126162 TACCCCAATGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAATCAAGAA 126221 | || |||||||||||||||||| ||||| | ||| ||||||| ||||||||| Sbjct 1208989 TTACCTGCTGGTATTAATGCAATTGTTGCAATTTTATCTTATTCTGGATATAATCAAGAA 1209048 Query 126222 GATAGTGTTATTCTTAATAAAGCATCTATCGAAAGAGGTTTATTT 126266 ||| ||||||| | ||| || || || || | ||||||||| Sbjct 1209049 GATTCTGTTATTATGAATCAATCAGGAATTGATCGTGGTTTATTT 1209093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658388303627600