Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 778 0.0 seq15 735 0.0 seq39 316 2e-81 >seq5 Length=1449561 Score = 778 bits (862), Expect = 0.0 Identities = 1465/2155 (68%), Gaps = 60/2155 (3%) Strand=Plus/Minus Query 46972 CTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031 |||| || || | ||| || | ||||| |||| ||| |||| |||||||||||| | Sbjct 1213778 CTTTATCGACTGAAAATTTTACAGGATTTGCAGCTGGTTTCGTTCTTAAATAATACATCC 1213719 Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT---ACTAGTTAATTTAGAATAAC 47088 | || |||||||| | ||||||| ||||| || |||| || || | ||| Sbjct 1213718 CTGTTTTTAAACCAAGTTTCCATCCGCGAAAATGTATGGAACTACATA-TTCCG--TAAG 1213662 Query 47089 TAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAG 47148 |||| || | || ||||||||||||||| |||||||||||||| |||||||| | Sbjct 1213661 ATGGTTTTGCTACATAAATATTAAGAGATTGGGATTGATCAATAAATGCTCCTCTATCTG 1213602 Query 47149 CTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAA 47208 | |||||||| | || || |||| | ||| |||||||| || ||||| | | |||| Sbjct 1213601 CAGCCATATCAATGATGTCCTTTTGAGATATTTCCCATACGGTCTTATACAAATCCTTAA 1213542 Query 47209 TGTCTTCTGGGAGA---TTAGTATTTTGAATAGATCCTCCgttttctataattttgtttt 47265 | | ||||| | ||| ||| || |||||||| | | || | || |||| Sbjct 1213541 TATGATCTGGAATTCCTTTAATATGTTTTATAGATCCATTATAATAAATTAATTGGTTTA 1213482 Query 47266 ttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAA 47325 |||||||| ||| | ||| |||| || | |||||| || || || || | Sbjct 1213481 ATAATTCATCATTCCACAAATTTAATTCAACCAAATCGTGTAAAAGGTGTGGGTTTACCA 1213422 Query 47326 TTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAG 47385 |||||| |||||||| | ||| | | |||| | ||| ||||| ||||| | | Sbjct 1213421 CTTGAAAATCTCCAGACAATACCCGTCTCATATACAAATTTGAAGTATAAGGTTCAAATG 1213362 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 | |||||||| |||||||||||||||||||||||||| ||||| | || || || || Sbjct 1213361 ACTCATTATTACCAAAAATTTGAGCAGTTGATGCTGTTGGCATTGGAGCTACCAACAATG 1213302 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 |||||||| ||||||||| || | | ||||||||| | || Sbjct 1213301 AATTTCTTATACCATATTTTCTAATTTTTTCTTTTAATAATGACCAATCCCATAAATTAC 1213242 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 |||| ||| ||||| ||||||||||| | ||| || | || ||||||| | || Sbjct 1213241 TTGGAGTAACTTTCCATAAATCATATTGTAAAATGCCACGAGATACAAGAGAACCTTCAT 1213182 Query 47566 ATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAAT 47625 | |||| ||||||||| ||| || ||| | |||||| ||||||||||||| || || Sbjct 1213181 AAGTTTCATAAGGACCATATTCTTCAGCTAATTCACATGAAGCTTCCAATGCACCATGAT 1213122 Query 47626 ATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANN 47685 |||||||||||||||||||| |||||| || | |||| ||| || | | ||||| Sbjct 1213121 ATATTGTTTCAAATATTTTTTTGTTTAAATCTTTAGCTTGTGAAGAAGCGTAGGGATATC 1213062 Query 47686 NNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTT 47745 || |||||||||||||||||||||||||| ||||| || | ||| | Sbjct 1213061 TTAAAAGTATAAAAGTATCTGCCAATCCTTGAACACCAATGCCAATAGGACGATGTTTCA 1213002 Query 47746 TATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGAN 47805 |||| || | || |||| ||||||||| | ||||||||||| || ||||| | | Sbjct 1213001 TATTTGATATACGAGTTTCTTCTAATGGATAATAATTTATATCTATTATCTTATTCAAAT 1212942 Query 47806 NNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATT-AAAATCAAA-----------CT 47853 ||||| | | || || || ||||| || | Sbjct 1212941 TTTTTGTTAAAAGTTTAGTAATTT-TGTGAAGTTGTTTAAAATTGAATGAAGTAATCCCA 1212883 Query 47854 TGTTATTTAT-AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCA 47912 | || ||| | |||||| ||||| | || |||||| | | ||||||||||| | ||| Sbjct 1212882 TCTTCTTTTTCAACAAATCTATTTAAAGCAATAGATCCCAAGTTACATACAGCGATTTCA 1212823 Query 47913 TTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAA 47972 |||| | || |||||| | ||||| | ||||| ||| |||||| || | || ||| Sbjct 1212822 TTTGAAGAAGAATATTGAACAATTTCTGTACATAAATTTGAACATTTTATGATTCCTAAA 1212763 Query 47973 TTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTT 48032 || | |||||| | ||||| || || |||| ||| |||||||||||||| Sbjct 1212762 TTATTTTGATTACTTTTACGATTACAATGATCTTTATAAACCATGTAAGGTGTTCCAGTT 1212703 Query 48033 TCTATCTGAGATTCAATGATAGATTTCCAAA-CAGTCCTAGCCTTTATA--ACAGCTCTA 48089 || || ||| |||| || || ||| | || || | ||||| || || || || Sbjct 1212702 TCAATTTGACTTTCACATATTTTTTGCCAGAGCATTCGT-GCCTTGATTTGACTTCTATA 1212644 Query 48090 GCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTA 48149 | || || ||| ||| |||||| |||||| | |||||||| || || | |||| Sbjct 1212643 ACGTTTTT--CATTTTCATATTTAACATATAAAGTTTCAAATTCTTCTCCCCAACTATTA 1212586 Query 48150 TCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTA 48209 || | || |||||||| | |||||||||||||||||||| ||| ||| || | Sbjct 1212585 TCAAGACCTGGACATTCGTGAGGACACATCAATGACCAATAAGAATCCCTTTCAACACGT 1212526 Query 48210 GTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCA 48269 ||||||||| ||| || | ||| | | | ||||||||| | || | | ||||| Sbjct 1212525 TTCATAAATAAATCAGGAACCCATAAACCATAAAATAAATCACGAGCACGTTCCTCTTCC 1212466 Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 || |||| | ||||| | | ||| | | ||||| |||||||||||||| | | Sbjct 1212465 GGACCTGTATTTTTCTTAAGATTTAAAAATTGAAAAATATCTGCATGCCATGGTTCAATA 1212406 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 || || || | | | ||||||| |||||| || |||||||| | ||| | ||||||| Sbjct 1212405 TAAATAGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATAACGAGCAGTATCA 1212346 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 ||| | |||| |||||| || || | |||||||| || ||||| ||||| |||| || Sbjct 1212345 TTAAATACTCGTAACATAGGAACTAATCCATTTGAAATTCCATTTGTTCCACTAATAAAA 1212286 Query 48450 CTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATT 48509 ||| | || | |||||| ||| | ||| | |||||||| ||| || ||| Sbjct 1212285 GATCCTGTGGCACGAATATTATTAACACTTAGACCAACTCCACCTGCACCTTTTGAAATT 1212226 Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 | |||||| |||||| ||||||||||| |||||||| |||||| | ||| ||||| Sbjct 1212225 ATAGCACAATTTTTAAGAGTATCATAAATACCTTCTATTGAATCATCCACCATTGTTAAT 1212166 Query 48570 AGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCA 48629 | |||||| |||| ||| | ||||||| |||| |||||||||| |||||| Sbjct 1212165 AAAAAACATGATGACAATTGTCCTTTTGGTGTTCCTGCATTATATAATGTTGGTGATGCA 1212106 Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCAT 48689 || | ||||||||| | || | | ||||||||||||| ||||| || ||||| | Sbjct 1212105 TGTAAAAACCATTTTTGAGACATACAGTTATATGTTTCAAGTACAGATTCAATATCTTCT 1212046 Query 48690 TGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTA 48749 ||| ||||| | || |||||||| || | || ||| |||||||||||||| | || Sbjct 1212045 CCATGAATACCAACAGCAACACGCATAAAAAGATGTTGTGGTCTTTCAACAATACAGCTA 1211986 Query 48750 TTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAA-ATAGTTGTATGAAAA 48808 || ||| | || | ||||||| |||||| |||||||||||||| | ||| || || Sbjct 1211985 TTAATTCTTAACAAATATGATCGTTCCAACGTTTTAAAACCAAAGAAAGTAAAATTGTAA 1211926 Query 48809 GTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTTATATACTACATCCAT 48868 || | | || | |||| ||||| || | |||| |||||||| | | || | || Sbjct 1211925 -TCTCTTTTATGATCGATTGCTGAATCTAATATTTCTTTATGTTT-TTGAATAATTAAAT 1211868 Query 48869 TACATTTTTTGAT-ATAATTG----AT---TCCTTGTA---------AAGATCTTCTACA 48911 || ||||| | ||||||| || | ||||| | | || |||| Sbjct 1211867 TAGTTTTTTCACTAATAATTGGACTATGTCTTTTTGTATTTTTATTTATATTATTATACA 1211808 Query 48912 A------CATCACT-----AAATAttttttttGTTTCTTTATGAAGATTAGATATAGATA 48960 | ||| ||| ||| | || || |||| |||||| | ||| || |||| | Sbjct 1211807 ATCTATCCATAACTTTTGAAAAAACTTCTTCCGTTTGTTTATGCATATTTGAAATAGCAA 1211748 Query 48961 TTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTG 49020 |||||| ||| || || ||||||| ||||| || || | || || | ||| | Sbjct 1211747 TTCTAGAAGCCAAAATGCCATAATCAGGATGTATAACAGTTCTATTAGCAGCAACTTCAG 1211688 Query 49021 CTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAAC 49075 ||||||| |||| | ||| ||||||||||||| |||||| |||||||| ||| Sbjct 1211687 CTGCTAAGTTATCAAGTTCAACAGTAGTTACACCTTTATATAATCCTTGAACAAC 1211633 >seq15 Length=622252 Score = 735 bits (814), Expect = 0.0 Identities = 1546/2313 (67%), Gaps = 111/2313 (5%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || || ||||||||||| | || | |||| | |||||| ||| |||||||| ||| Sbjct 204908 TTATCAACGGTAAACTTAATAGCATCAACAGCTGGTCTTGTTCTTAAGTAATACATTCCA 204849 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 ||||||||||| ||||||||| |||||||||| | | || | ||| | ||| Sbjct 204848 GTCTTTAAACCACGTTTCCATCCATGGAAATGCATAGAACTACATACGGCATATGTTGGT 204789 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 | || | ||||| |||||| |||||| |||||||| | || || | |||||| ||| Sbjct 204788 TTTGCTACATGAAGATTAAGTGATTGAGATTGATCAATGTAAGCTCCACGATCAGCAGCC 204729 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || || | ||| || |||| | || ||||| || || ||||||| || || || | | Sbjct 204728 ATCTCAATGATATCCTTTTGAGAAATTTCCCAAACAGTCTTATAAAGTTCCTTGATATGT 204669 Query 47214 TCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataattttgttttttaat 47270 ||| | || |||||||||| || || ||| |||||||| || | | | Sbjct 204668 GTTGGTATTCCAGCGATATTTTGAATTGAACCATTATTTGATATAATTTCATTCATAACT 204609 Query 47271 tcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGA 47330 || | ||| | || | ||| | || ||| | ||||||||||||||||||||| Sbjct 204608 TCTTCACTCCACAAGTTAAGGTCAATCAAATCTTTAAGAAGATGAGGATTAACAATTTGG 204549 Query 47331 AATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCA 47390 || |||||||| || || | ||| || |||||||| ||||||||||| ||||||||| Sbjct 204548 AAGTCTCCAGAGAGAACACGACGTGTAAATATATTAGAAGTATATGGTTCAATAGATTCA 204489 Query 47391 TTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTT 47450 ||||| || | |||||| ||||| || || || ||||| | || | ||| | | |||| Sbjct 204488 TTATTCCCTAGAATTTGGGCAGTAGAAGCAGTTGGCATTGGAGCTAATAAAAGGGAATTT 204429 Query 47451 CTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCA-AAGAT-CTGATG 47508 ||||| |||| || || | ||||||||| ||| | || || Sbjct 204428 CTTACACCATGCTTGGCAATTTTTTCCTTCAATTTAGCCCAATCCCATAAGTTACT--TG 204371 Query 47509 GAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATG 47568 | |||||||| | ||||||||| | |||||||||| | || || |||| ||||| Sbjct 204370 GTGTTACATTCCACATATCATATTGTAAAATTCCTTTAGAAACTGGTGATCCATGATATG 204311 Query 47569 TTTTATAAGGACCGTA--TAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626 ||| ||| || || | ||| ||| | ||| || || ||||| || | || ||| Sbjct 204310 TTTCATATGGTCCATCCTTAGC--AGCTAATTCGCAGGAAGCCTCCAAAGCTCCATGATA 204253 Query 47627 TATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCT-GATGATTCAAAAGGATANN 47685 || |||||||| ||||| | || || ||| ||| | | ||| || ||||| Sbjct 204252 AATAGTTTCAAAAATTTTCTTATTAAG-TTCTTTGGCCCGAGGAGATGTGAATGGATATC 204194 Query 47686 NNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTT 47745 || ||| || ||||||||||||||||| ||||| || | ||| | Sbjct 204193 TCATAAGCATAAAACAATCAGCTAATCCTTGAACACCAATTCCAATGGGGCGATGTCTAA 204134 Query 47746 TATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGAN 47805 || || || || || |||| ||||| | || | ||| ||||||||||| | | Sbjct 204133 AGTTTGATTTCTTTGCCTCAGGTACAGGATAATAATTGACATCAATAATTTTATTCA-AA 204075 Query 47806 NNNNNNNNNNNNNNNNNACAATTTCTCTTAATTT-ATTAAAATCAAAC-----TTGTTAT 47859 | || | || || |||||||| ||| ||| | Sbjct 204074 TTTTTAGCAAGAATCTTAGAAACAAGATGAAGTTGATTAAAATTAAATGATGGTTGCCCT 204015 Query 47860 TTAT-------AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCA 47912 || | ||| || ||||| | ||| || ||| ||| |||||| ||||| || ||| Sbjct 204014 TTCTCAATATCAACGAATCTATTCAATGCAATTGATCCTAAATTACAAACAGCAACTTCA 203955 Query 47913 TTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAA 47972 | |||| | ||||| | ||||||| ||| |||||| |||||| || || ||||| Sbjct 203954 TCTGGAGCACAATATTCAACAATTTCAGTACAAAGATTAGAACATTTAATTGTTCCCAAG 203895 Query 47973 TTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTT 48032 ||||| |||||| | | ||||| |||||||||| |||| | || ||||||||| Sbjct 203894 TTTTGTTGATTACTTTTTCTATTACAATGATCCTTGTAAACCATATATGGAGTTCCAGTT 203835 Query 48033 TCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCT 48092 ||||| ||| |||| || || ||||| | ||||||||| || | | | || Sbjct 203834 TCTATTTGACTTTCACAAATCTTTTGCCAAATAACCCTAGCCTTGATTT--GTTTT--CT 203779 Query 48093 TTA----TTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATT 48148 || || ||| || || || || || || || |||||||||||||| | || Sbjct 203778 GTAACGCTTCTCAGTCTCATACTTTGTGTACAATTTTTCAAATTCATCCCCCCAACAATC 203719 Query 48149 ATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCT 48208 ||||| || |||||||||| |||||||||||||||||||| ||| |||| || | Sbjct 203718 TTCTAATCCTGGACATTCATGAGGACACATCAATGACCAATATGAATCTTTTTCAACACG 203659 Query 48209 AGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTT 48267 ||||||| | ||| || | ||| | | | ||| |||||||| | || | | |||| Sbjct 203658 TTTCATAAACAAATCAGGAACCCATAAACC-ATAGAATAAATCACGAGCACGTTCCTCTT 203600 Query 48268 CATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTA 48327 | || |||| | ||||| || | ||| ||||| ||||| |||||||||||||| | Sbjct 203599 CTGGTCCTGTATTTTTCTTAAGATCCAAAAATTCCATAATATCTGCATGCCATGGTTCCA 203540 Query 48328 AATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTAT 48387 |||| ||||| | | || |||| ||||| || |||||||| | |||||| ||||||| Sbjct 203539 AATAAATTGCAAAAGCTCCAGGTCTCTTATTTCCACCTTGATCAACATATCTTGCAGTAT 203480 Query 48388 TGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATAT 48447 |||| ||||||| |||||||| || | ||||||||| | ||||| ||||| |||| Sbjct 203479 TGTTGAAAACTCTCAACATTGGTACCAATCCATTTGATGTTCCATTAGTTCCACCAATAA 203420 Query 48448 AACTTCCACTAGCTCTTATATTACTAA-TTGAAATACCTATACCACCTGCCATTTTAGAT 48506 | |||| | || | ||| | || | ||| || ||||| || || ||| || Sbjct 203419 ATGATCCATTGGCACGAATACAATGAACATTTAAT-CCAATACCTCCAGCAGATTTTGAA 203361 Query 48507 ATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTT 48566 |||| |||||| |||| | ||||||||||| ||||| ||| ||| | ||| || Sbjct 203360 ATTAAAGCACATTGTTTCAATGTATCATAAATCCCTTCAATAGAATCTCCAGCCATTGTT 203301 Query 48567 AATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGAT 48626 |||| ||||| ||||| ||| ||| || ||||||| |||||||| ||||||||| Sbjct 203300 AATAAGAAACATGAAGACAATTGTGGACGAGTTGTTCCTGCATTAAATAGTGTTGGAGAA 203241 Query 48627 GCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC 48686 ||||| |||||||||||| ||| | || || |||||||| ||||| ||||| ||||| Sbjct 203240 GCATGTGTAAACCATTTCTGTGACATAAAATTGTATGTTTCGATAACTGAATCAATATCT 203181 Query 48687 CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746 | ||| ||||| | || || | ||| | | || ||| ||||||||| ||||||| Sbjct 203180 TCTCCATGAATACCAACAGCAACTCTCATAAGTAAATGTTGTGGTCTTTCAGCAATTTTC 203121 Query 48747 TTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAA 48806 || || ||||| |||||||| || ||| || ||||| || ||||| | ||| | Sbjct 203120 TTGTTGATTTTTAAAAGATAAGAACGTTCTAAAGTTTTGAATCCAAAGAATGAGTAGTCA 203061 Query 48807 AAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTTATATACTACA--- 48863 ||||| | |||| || || | ||||| | | | || |||||| | | |||| Sbjct 203060 AAGTCTCTGTCATAAACGATAGCAGAATTAAGTTTGTCAGCATGTTTTTGAATTACATTG 203001 Query 48864 --------TCCATTA--CATTTTTTGATATA----ATTGATTCCTTG----------TAA 48899 | || || |||| | || || | | || | || || Sbjct 203000 TATGTTTCTTCACTAATCATTGGTGTATGTACACCAGTAATATCATGACGATAATGATAC 202941 Query 48900 AGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGAT 48959 || || | ||| || ||| |||| ||||||| |||||| | || || |||| Sbjct 202940 AGGTCACTCATAACTTCTGAGAATGTTTTCTTTGTTTGTTTATGCATGTTGGAGATAGCG 202881 Query 48960 ATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATG--TACTAGATATTT 49017 ||||| || || || ||||||||||| ||||||| |||||| |||| | || | | | | Sbjct 202880 ATTCTTGCTGCCAAAATAGCATAATCAGGATGAAGTGTTGT-CATGTTTGCT-GCTGTCT 202823 Query 49018 CTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTT 49077 |||| || | |||| ||||| |||| |||||| | |||| ||||| ||||||| Sbjct 202822 CTGCGGCAAGGTTATCCAATTCAACGGTAGAAACACCTTTGTATAAACCTTGGATAACTT 202763 Query 49078 TCATTG-----------------------------------------CTATATTTACTGG 49096 ||| || |||| ||||||| Sbjct 202762 TCAATGTCACCATGCTCTAAAAAAAAATAGTGATAATAACAAAAAAATTATACTTACTGG 202703 Query 49097 ATCTATATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTATC 49156 |||||||| |||||||| || | |||||||||||| |||| || ||||| ||||| Sbjct 202702 ATCTATATAATCCATATTCAATTTGTAACATAATTTTGAAATTCGTGAAGTAATCTTATC 202643 Query 49157 AAACATTATATTCTCTTTACGACCGTCACGTTT 49189 ||| | |||||| ||||| || ||||| || Sbjct 202642 AAAATGAACATTCTCCTTACGTCCATCACGCTT 202610 >seq39 Length=206625 Score = 316 bits (350), Expect = 2e-81 Identities = 574/827 (69%), Gaps = 26/827 (3%) Strand=Plus/Plus Query 18604 TGTTATGGTTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACT 18663 || ||| |||||||||| ||||||| | ||||| | ||||| | || ||| || Sbjct 48593 TGATATCATTAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAAC- 48651 Query 18664 CCCATTT-TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGA 18722 ||||| | |||||||||| | |||| | |||||||||||||| || ||||| || | ||| Sbjct 48652 CCCATATCTTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGA 48711 Query 18723 TATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTC 18782 | | |||| ||||||||||||||||| || ||||| |||||| | || ||| Sbjct 48712 AAGGTTTACCATGAAATCAAATGGATTTTTAACCTTATAAATTTTTGGCATGTTTAGTTC 48771 Query 18783 TAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCAC-AATTCATTC 18841 || || ||| || ||| ||| ||| || || ||| | ||| ||||||| | Sbjct 48772 AGTTAAAAGGTGATCAGCAACATATTCAATGTAGGTACACATTA-ATCTTGAATTCATAC 48830 Query 18842 CTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCT--C 18899 | || | | |||||| || ||||| || | | |||| | || || | || || | | Sbjct 48831 CAATCATATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTC 48890 Query 18900 TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAG----AAGATGTTTAAACA 18955 | || || | || || | | ||| || || ||| || ||||| |||||| Sbjct 48891 TAAT-TATTTCATGCA-CACGCTCTACA----GACGGTTTATTCTCAAGATAACTAAACA 48944 Query 18956 TCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015 | | ||| |||||||| | ||||| ||| || ||||| || |||||||| ||| Sbjct 48945 TGAGACAAGCAAAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGAC 49004 Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAA 19075 ||||| ||||| | ||| | |||||||||||| || || |||||||| || ||||| | Sbjct 49005 ACAAACCTGGCATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGA 49064 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135 | ||||| ||||| || || |||||||||| | | ||||||| || |||| |||| Sbjct 49065 AAAATATTCCTTCAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTAT 49124 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCT-CTATA 19194 | ||||||| | | ||||||||||||||||| || | | || || ||| || | Sbjct 49125 CGTTAATCCATCTTAAAGCCCAATCAGCCTTCTTCTTGATAAAT-TCAAACTCTGTTAAA 49183 Query 19195 GAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT- 19253 | ||| || || | | | ||||| || || || || || | ||||| |||| Sbjct 49184 GCATTGAAAAGCTTATTTCTTTCATCAGTGTC----ACGGATATATGTTTCAATTAACTT 49239 Query 19254 ---GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 ||||| || ||||||||| || ||||| || |||||||| ||||| | | ||| Sbjct 49240 GGAATACATCTCACTATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGC 49299 Query 19311 TTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATC 19370 ||| | | || ||||| | |||||||||| |||||||||||||| || |||||||| Sbjct 49300 TTCAGGGACTTGGACTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATC 49359 Query 19371 ACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCAT 19417 ||| ||||| || |||| ||| | ||||| | | |||||| Sbjct 49360 GGAAGCAGCAAAGAAGGCTAGGACACGAGATATAAAGTATCTTTCAT 49406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562096082288400