Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq858 107 6e-19 >seq858 Length=1962 Score = 107 bits (118), Expect = 6e-19 Identities = 135/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||||||||||||||||||||| || || ||| || || || ||||| || ||||||| Sbjct 1815 ACGGAAAGCTGAGCTGCCAGCTGTATCAACGCTCAGCCGATGTGTTCCTAGGGGTGCCGT 1756 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTC---GGACTGA 24936 |||| ||||| |||||| ||||| || || | | || | || || || ||| Sbjct 1755 TCAACATCGCCTCCTACGCCCTGCTCACGCA---CATGCTGGCCAAGGTCGTGGGGCTGG 1699 Query 24937 AGGTCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGC 24996 || ||||| ||| || ||| |||||||| |||||||||| |||||| | |||| Sbjct 1698 AGCCGGGCGATTTCGTCCACACCTTCGGCGACGCCCACCTGTATCTGAACCATCTGGAGC 1639 Query 24997 AGGC 25000 |||| Sbjct 1638 AGGC 1635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164169271310880