Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq39 273 3e-68 seq1 129 7e-25 >seq39 Length=206625 Score = 273 bits (302), Expect = 3e-68 Identities = 560/820 (68%), Gaps = 28/820 (3%) Strand=Plus/Plus Query 36827 TTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTT- 36885 ||||||||| |||| || ||||| | ||| | | | | |||||| ||||| | Sbjct 48601 TTAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAAC-CCCATATC 48659 Query 36886 TTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTT 36945 |||||||||| |||| |||| || ||||||||||||||||| | ||| | ||| Sbjct 48660 TTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGTTTA 48719 Query 36946 CCATAAAATCAAATGGATTAGATGTA---TTATATATAGTACTACATGATAA-TTCCTTC 37001 |||| |||||||||||||| | || ||||| || | |||| | | ||| | Sbjct 48720 CCATGAAATCAAATGGATT---TTTAACCTTATAAATTTTTGG-CATGTTTAGTTCAGTT 48775 Query 37002 AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATT 37061 | ||| ||| |||||| |||| ||||| ||||||||| | | || |||||||| Sbjct 48776 AAAAGGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATC 48835 Query 37062 AGTTTTACTGGAATTGCATCTTGAAG--AAATAGTTTTTCT--ATTATTACAGCATCTTT 37117 | | || |||| ||||| || ||||| | |||| ||| ||||||| | | Sbjct 48836 ATATCAACAGGAAGAGCATC----AGTTAAATATTCCTTCTCAATTTCGACAGCATTTCT 48891 Query 37118 AACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACA 37177 || ||| | | | | ||| ||| || || | | ||| |||||| | ||| Sbjct 48892 AATTATTTCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACA 48951 Query 37178 TGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCC 37237 |||||||| | |||||| ||||||||||| || |||||||| ||| || || Sbjct 48952 AGCAAAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACC 49011 Query 37238 TGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAAT 37297 ||||||||| || | |||||| | |||||| |||| |||||||| ||||| || || || Sbjct 49012 TGGCATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATAT 49071 Query 37298 ACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAAT 37357 |||||||| || ||||| || | || |||| || |||| || | | | ||| ||| Sbjct 49072 TCCTTCAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTAAT 49131 Query 37358 CCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC-AATTGTTTCAATTGCTTTTA 37416 |||| || | |||||| ||||| || | | |||| || | | | || || || | Sbjct 49132 CCATCTTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAACTCTGTTAA-AGCATTGA 49190 Query 37417 AGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT----ATAC 37472 | || ||| |||| ||| | || ||||| || |||||| |||| |||| Sbjct 49191 AAAGCTTATTTCTTTCATCAGTGTCACGGATATATGTTTCAATT----AACTTGGAATAC 49246 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 || ||| |||||||| || ||||| || ||||| |||||||| | | ||||||| Sbjct 49247 ATCTCACTATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGG 49306 Query 37533 AATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 | ||| || || || |||| || | | | || |||||||| || || ||||| ||| Sbjct 49307 ACTTGGACTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCA 49366 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT 37632 |||||||| || || ||| |||||| | |||||||| Sbjct 49367 GCAAAGAAGGCTAGGACACGAGATATAAAGTATCTTTCAT 49406 >seq1 Length=6158768 Score = 129 bits (142), Expect = 7e-25 Identities = 121/154 (79%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 |||||||||||||| ||||||||||| |||||| | |||||| | ||||| || ||||| Sbjct 2809874 GGTGTTTTACATACGAAATTTTGGATTGTTGATCAAAAACATATTTATATTGGTAGTGCA 2809815 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAAT 153407 ||||||||||||| |||| ||||| |||| || ||| | ||| | |||| | || | Sbjct 2809814 AATATGGATTGGAAATCATTAACTGAAGTCAAGGAACTTGGTGTCTTAATTGAAGATTGT 2809755 Query 153408 TCTTGTATAGCTAATGAACTAACTAAAATATTTA 153441 || ||| |||| |||| || ||||||||||| Sbjct 2809754 TCCTGTTTAGCACATGATTTACATAAAATATTTA 2809721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592303398832400