Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq858 114 1e-20 >seq858 Length=1962 Score = 114 bits (126), Expect = 1e-20 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 29809 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29868 |||| || | ||| || | ||| ||||| || | ||||||||| || || ||||| || Sbjct 1641 TCCAGATGGTTCAGATACAGGTGGGCGTCGCCGAAGGTGTGGACGAAATCGCCCGGCTCC 1700 Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 ||||| ||| | |||| ||||| |||||| || | |||| ||||||||| || || Sbjct 1701 AGCCCCACGACCTTGGCCAGCATGTGCGTGAGCAGGGCGTAGGAGGCGATGTTGAACGGC 1760 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| || || || | || | || || ||||| || |||| ||||||| Sbjct 1761 ACCCCTAGGAACACATCGGCTGAGCGTTGATACAGCTGGCAGCTCAGCTTTCCGTCGGCG 1820 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30048 ||| | || || ||| | |||||| || || || |||||| | ||| || ||| Sbjct 1821 ACGAAGAATTGGAACAGGCAGTGGCAGGGCGGCAGCGCCATGTCGTCCACATCGGCCGGG 1880 Query 30049 TTCCAGGCGCACACGATG 30066 |||||||||| |||||| Sbjct 1881 TTCCAGGCGCTGACGATG 1898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408608586151130