Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq94 107 8e-19 seq148 98.7 4e-16 >seq94 Length=41210 Score = 107 bits (118), Expect = 8e-19 Identities = 166/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 ||||||||| ||||||||| ||||||| || ||| |||||||||| |||| || Sbjct 29208 CGTCAACAAGGTCATCCTCATCGGCAACCTGGGCAAGGACCCGGAAATCCGCACGCTGAA 29267 Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGC 10091 ||||||||| || ||||| | ||| |||| ||| | || | | |||||||| Sbjct 29268 CAGCGGCGACCGCGTCGCCAACCTGCGCATCGCCACGTCGGAGCAATGGCGCGACAAGGC 29327 Query 10092 GAGCGGCGAGATGAAGGAATCGACCGAATGGCAC-CG--CGTCAGCTTCTTCGGCCGCCT 10148 | ||||||| |||||| |||||| |||||| || ||||| ||| || | | Sbjct 29328 CACCGGCGAGCGCAAGGAAAAGACCGAGTGGCACGCGGTCGTCATTTTCAACGAGAACAT 29387 Query 10149 CGCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGC 10203 || | || | | ||| | |||||| |||||| || | || |||||||||||| Sbjct 29388 CGTCAAGGTGGCCGAGAACTACCTGAAGAAGGGCTCGACCGTTTACATCGAGGGC 29442 >seq148 Length=19139 Score = 98.7 bits (108), Expect = 4e-16 Identities = 204/299 (68%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 ||||||||| ||||||||| |||||||||| ||| ||||||||||| ||| | || Sbjct 693 CGTCAACAAGGTCATCCTCATCGGCAATCTGGGCCGCGACCCGGAAATCCGTTCGCTGAA 634 Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGC 10091 | ||||||| || ||||| | ||| |||| || | || || |||||||| Sbjct 633 CAACGGCGACCGCGTCGCCAACCTGCGCATCGCCACCTCGGAAACCTGGCGCGACAAGGC 574 Query 10092 GAGCGGCGAGATGAAGGAATCGACCGAATGGCAC-CG--CGTCAGCTTCTTCGGCCGCCT 10148 | ||||||| |||||| |||||| |||||| || |||| |||| | ||| Sbjct 573 CACCGGCGAGCGCAAGGAAAAGACCGAGTGGCACTCGGTTGTCATCTTCAATGAGAACCT 514 Query 10149 CGCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCA- 10207 |||| | | | || |||| ||| ||||| | ||| || ||||| || ||| Sbjct 513 CGCCAAAGTGGCTGAGCAGTATCTGAAGAAGGGTTCCAAGGTTTATATCGAAGG-TGCAC 455 Query 10208 TCCGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGATCGTC 10266 ||| || || |||||||||||| | ||| || || |||||||||||||| Sbjct 454 TCCAGACACGTAAGTGGCAGGATCAGCAGGGCGTCGAGAAGTATTCGACCGAGATCGTC 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197784548776980