Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq547 161 8e-35 seq29 161 8e-35 seq82 91.5 1e-13 seq28 84.2 2e-11 >seq547 Length=3469 Score = 161 bits (178), Expect = 8e-35 Identities = 182/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 |||||| || | | ||| | ||| || |||||||| ||||||||||| ||||| ||||| Sbjct 1363 ATTTCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATC 1422 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | |||||| |||| || | |||||| || ||||| || | ||| ||||| || || Sbjct 1423 AGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGG 1482 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 || || ||||| ||||||||||| ||| || || | || | ||| || || | ||| Sbjct 1483 AGGGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTC 1542 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCG 101478 || |||||||||| || || || |||||||| || ||||| |||||||| | | || Sbjct 1543 AACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCATACCTCCACG 1602 Query 101479 AAGA 101482 |||| Sbjct 1603 AAGA 1606 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| | ||| || || || || ||||| || ||||| || | | Sbjct 1595 CCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAG 1654 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| || || ||||| || | ||| |||||||| || || Sbjct 1655 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 1714 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| |||||||| || ||| || | || | ||||||||| | ||| ||| Sbjct 1715 ATTCCTTCTTTGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACT 1774 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | ||||| || |||||||| || ||||| || ||||| Sbjct 1775 TCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCAT 1821 >seq29 Length=268433 Score = 161 bits (178), Expect = 8e-35 Identities = 182/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 |||||| || | | ||| | ||| || |||||||| ||||||||||| ||||| ||||| Sbjct 198312 ATTTCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATC 198371 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | |||||| |||| || | |||||| || ||||| || | ||| ||||| || || Sbjct 198372 AGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGG 198431 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 || || ||||| ||||||||||| ||| || || | || | ||| || || | ||| Sbjct 198432 AGGGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTC 198491 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCG 101478 || |||||||||| || || || |||||||| || ||||| |||||||| | | || Sbjct 198492 AACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCATACCTCCACG 198551 Query 101479 AAGA 101482 |||| Sbjct 198552 AAGA 198555 >seq82 Length=59906 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||| ||||| || | || ||||| || || ||||| ||||| || ||||| ||||| Sbjct 47881 ACCAGCAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGA 47822 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 || ||| | || | ||| || || | || ||||||||||||| |||||||| || | Sbjct 47821 CTTGACATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAG 47762 Query 101449 AGTTTTTACAAATATCTGCATGGTT 101473 |||||| || || || |||||| || Sbjct 47761 AGTTTTGACGAAGATTTGCATGATT 47737 >seq28 Length=270198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| || | ||| || ||||| || || || ||||| |||||||| || || Sbjct 52628 CTTACCGGCAAAGATAAGACGTTGCTGATCTGGAGGGATACCTTCCTTATCTTGGATCTT 52687 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||||| | || | || || || | || ||||||||||||| || || || || Sbjct 52688 GGCTTTTACATTCTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGT 52747 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || || ||||| Sbjct 52748 AAGAGTCTTAACGAAAATTTGCAT 52771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396269658346170