Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq50 84.2 3e-11 >seq50 Length=153230 Score = 84.2 bits (92), Expect = 3e-11 Identities = 187/278 (67%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 197021 TCAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGT-TG 197079 ||| ||| ||||| | || || ||||| |||||||| || | || | | ||| | Sbjct 97764 TCAAATCTTCGTCTTTTAATCCAGTACCAATCTTACATATTGTTT-GAAATTCTTCCATA 97706 Query 197080 TCGGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCG 197139 || || |||||||| | ||| | | || | ||| ||||||||||| | || Sbjct 97705 TCATAATCATAACAGGCTAATAAATATCCACCAAATACTCCTGTTCTCTTTCCGGCACCA 97646 Query 197140 TTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTC 197199 | | || || | || || ||||| | ||| || | || || || | ||||| ||| Sbjct 97645 TAATAACCACCAAGTACAACAAGATCTAAAGTATCACCAACACCGTCAAGATAATCCTTC 97586 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGG 197259 || ||||| | |||| | ||||||||| ||||| || ||||| || ||| | |||| Sbjct 97585 TTGAGTTTTAACCAGTTGTGAGATCTCTTAGCAATTTCATAGGTAGCATTTTCATCCAAA 97526 Query 197260 GTCTTGATCATCAATCCCTCGCAATCTTCCTTCACGGC 197297 || || | ||| ||||| || || | | | || ||||| Sbjct 97525 GTTTTAACCATTAATCCTTCACATTTTCCTTTAACGGC 97488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676714288992800