Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq102 226 5e-54 seq538 149 1e-30 seq213 95.1 2e-14 seq1162 93.3 8e-14 seq370 89.7 9e-13 seq97 84.2 4e-11 >seq102 Length=32830 Score = 226 bits (250), Expect = 5e-54 Identities = 233/302 (77%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 192808 AACGTCTATTACAAGCAGATGGACGGTAAGGCCGCCTACGAGAAGGCCGTCCAGGATCGC 192867 |||||||||| ||||||||||| || ||||| ||||| || |||| || ||| | || Sbjct 10559 AACGTCTATTCCAAGCAGATGGCGGGCAAGGCGGCCTATGAAGAGGCGGTGCAGAACCGG 10500 Query 192868 CGCATCAAGGTGCTGGAAGCCCAGGCTGCGCGCGATTCCGCCAAGCTCTACGCCGAAGCT 192927 |||||| || ||||| |||||||| || | || || |||||||| ||||| || Sbjct 10499 CGCATCCGCGTACTGGAGGCCCAGGCCGCCCTGGACTCGGCCAAGCTGACCGCCGCCGCC 10440 Query 192928 GAGATCGAGCGCGCCAAGGGCACCGAGAAGGCCAACGAGATCATG-CAGAACGGCCTGGG 192986 ||||||||||||||||||||| || | |||||||| |||||| | ||| | ||||| Sbjct 10439 GAGATCGAGCGCGCCAAGGGCGCCAATGAGGCCAACCGCATCATGGCCGAA-GCTCTGGG 10381 Query 192987 CGGTCCGGAGAACTATCTGCGCTGGTCCTACATCCACATGCTGGAAGAAACCGCCGGCAA 193046 ||| || ||| |||||||||||||||||||||| |||||||| | || || || ||||| Sbjct 10380 CGGCCCCGAGGCCTATCTGCGCTGGTCCTACATCAACATGCTGCAGGAGACGGCTGGCAA 10321 Query 193047 GGGCGATCGCCAGATCATCTATATCCCGACCGAGGGCGCCATGCCCGTGATCGAAGCCGG 193106 || | ||||||| |||||| ||||| ||||||| | ||||| | | ||||| || Sbjct 10320 GGAAGGCCGCCAGACCATCTACATCCCCACCGAGGCGGGGATGCCGATCCTGGAAGCGGG 10261 Query 193107 CC 193108 || Sbjct 10260 CC 10259 >seq538 Length=3526 Score = 149 bits (164), Expect = 1e-30 Identities = 289/420 (69%), Gaps = 14/420 (3%) Strand=Plus/Minus Query 110917 CCGGTCGAGCCGAAGCCGCCCGTGCCACGCTCGGTCTGGTCAAGCTCCGCAACGACGTCG 110976 ||||| || ||||| ||||||| ||| || ||||| | ||| || | | || || || Sbjct 2657 CCGGTTGAACCGAATCCGCCCGCGCCCCGGTCGGTTTCGTCCAGGGCGTCGACCTCGACG 2598 Query 110977 AAA--CGGATGCGGACATAGGGCGCGAAGACGGCCTGGGCAATGCGGTCGCCGCGATTGA 111034 | || ||| | ||| | |||| || |||||| |||||||||||||| |||| Sbjct 2597 ATCTGCGCCTGCT--CGTAGCGGGCGATCACCATCTGGGCGATGCGGTCGCCGCGCTTGA 2540 Query 111035 TGACGAACGGATTGCGGCCGTGGTTGATCAGGATCACCTTGATCTCGCCGCGATAGTCGC 111094 | ||||||| ||||||||||| |||||| ||| || |||||||||||| |||| Sbjct 2539 TCTCGAACGGCAGCTCGCCGTGGTTGACCAGGATGACCCCGACCTCGCCGCGATAATCGC 2480 Query 111095 TGTCGACGGTACCGGGCGAATTCAGGACAGTGATAGACGACTTGGCGGCGAGGCCCGAGC 111154 |||||| ||| |||||||||||| | | | ||| ||| || |||||||||| Sbjct 2479 TGTCGATGGTGCCGGGCGAATTCGGCGCCGAGATCCCGTGCTTCAGCGCCAGGCCCGAGC 2420 Query 111155 GCGGCCGGACTTGCAGTTCCAGGCCCGCCGGCAGGGCGACCGTGACGCCGGTCGGGATGA 111214 |||| || || || ||| || | | |||||||| | | | || || || | Sbjct 2419 GCGGGCGCACCTGGGCTTCGTACCCGGGCTCCAGGGCGATCTTCAGACCAGTGGGCA--- 2363 Query 111215 TGCCGACTT-CGCCCGCAGCGAT--AGTA-AAGGGT-TCATCCTCGGGGATCGCGGCACG 111269 || | || ||| || | | | || | ||||| || |||||| || ||||| || Sbjct 2362 --CCAATTTGCGCTGGCCGGGCTCCAGCACCAGGGTCTCGCCCTCGGCGAGGGCGGCGCG 2305 Query 111270 CAAGTCCAGGCCGGCGGACCCACGGGTCTCGTAGGCTGGCAGCGGCAGGCCTTGGGCATG 111329 | ||||| |||||| || || |||||| ||||| ||||| | || ||| | ||| || Sbjct 2304 AAGGTCCATGCCGGCCGAACCGGCGGTCTCATAGGCGGGCAGGGCCAAGCCCTCGGCGTG 2245 >seq213 Length=11645 Score = 95.1 bits (104), Expect = 2e-14 Identities = 70/79 (89%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 185829 GCCGGCCAGTATGACGG-CTCCGACTACTACATCATCGGCGGCATCACCGAGGTGAACTA 185887 ||||||||| || ||| |||||||| ||| | ||||||||||||||||||||||||| Sbjct 2612 GCCGGCCAGG-TGCCGGGCTCCGACTTCTATGTGGTCGGCGGCATCACCGAGGTGAACTA 2670 Query 185888 CAACATCCGCTCGGGCGGC 185906 ||||||||||||||||||| Sbjct 2671 CAACATCCGCTCGGGCGGC 2689 >seq1162 Length=1364 Score = 93.3 bits (102), Expect = 8e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 132958 TTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTT 133017 |||| |||||||||||||| |||||||||||| ||||||||||| |||| || |||| Sbjct 814 TTGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTT 873 Query 133018 CAAATCCCTCCCCCGCATCCACAA 133041 ||||||| |||||||| ||| || Sbjct 874 CAAATCCTGCCCCCGCAACCAAAA 897 >seq370 Length=5836 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 1156 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 1215 Query 133023 CCCTCCCCCGCATCCACAA 133041 || |||||||| ||| || Sbjct 1216 CCTGCCCCCGCAACCAAAA 1234 >seq97 Length=38978 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 ||||| |||||||| |||||||||||| ||||||||||| ||||||| ||||||||| Sbjct 124 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGCAGGTTCAAAT 183 Query 133023 CCCTCCCCCGCATCCA 133038 || | |||||| ||| Sbjct 184 CCTGCTCCCGCACCCA 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895746133285200