Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq39 131 3e-25 >seq39 Length=206625 Score = 131 bits (144), Expect = 3e-25 Identities = 292/436 (67%), Gaps = 2/436 (0%) Strand=Plus/Plus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || ||||| || || || || ||||| || | | ||| | | || || || | | Sbjct 48950 CAAGCAAAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAA 49009 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | | ||| | ||| || |||| || ||||| |||||||| || Sbjct 49010 CCTGGCATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAAT 49069 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || || || || || || || || | | | ||||| ||||| || ||||| || Sbjct 49070 ATTCCTTCAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTA 49129 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT-ATGGCCCG 48369 ||||| | ||||| || |||||||||||||| || | | ||| | | || Sbjct 49130 ATCCATCTTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAAC-TCTGTTAAAGCATT 49188 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 ||| ||||| || | ||| | | ||| | ||| || | | ||| | ||||| Sbjct 49189 GAAAAGCTTATTTCTTTCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACAT 49248 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 |||| || | |||||| ||||| || || || || || ||| | || ||| || Sbjct 49249 CTCACTATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGAC 49308 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 || |||||| | || ||||| || | || ||| |||||||| || ||||| |||||||| Sbjct 49309 TTGGACTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGC 49368 Query 48550 AAAGAAGGCAAGGACA 48565 ||||||||| |||||| Sbjct 49369 AAAGAAGGCTAGGACA 49384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931511724070400