Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_019507.1 Length=182833 Score E Sequences producing significant alignments: (Bits) Value seq1410 87.8 2e-12 seq443 87.8 2e-12 seq567 86.0 7e-12 >seq1410 Length=981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 167466 TGGTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAACC 167525 ||||||||| || ||||||||||||| || ||| ||||||||||||| |||||| ||| Sbjct 580 TGGTCGGGGCGAGAGGATTCGAACCTCCGACCCTCTGGTCCCAAACCAGATGCGCT-ACC 638 Query 167526 AGACTGCGCTACACCCCG 167543 || |||||| |||||||| Sbjct 639 AGGCTGCGCCACACCCCG 656 >seq443 Length=4751 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 167466 TGGTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAACC 167525 ||||||| | || ||||||||||||| || |||| || ||||||| || ||||||| ||| Sbjct 3778 TGGTCGGAGCGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCT-ACC 3836 Query 167526 AGACTGCGCTACACCCCG 167543 || ||||||||||||||| Sbjct 3837 AGGCTGCGCTACACCCCG 3854 >seq567 Length=3368 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 167468 GTCGGGGTGAAAGGATTCGAACCTTCGGCCCCTTGGTCCCAAACCAAGTGCGCTAACCAG 167527 ||||||||| ||||||||||||| ||||| | || ||||||| || | ||| ||||| | Sbjct 1390 GTCGGGGTGGCAGGATTCGAACCTGCGGCCTCCTGCTCCCAAAGCAGGCGCGATAACCGG 1449 Query 167528 ACTGCGCTACACCCCGAAAA 167547 || |||||||||||||||| Sbjct 1450 GCTACGCTACACCCCGAAAA 1469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584924365786800