Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq148 89.7 2e-13 seq94 87.8 7e-13 >seq148 Length=19139 Score = 89.7 bits (98), Expect = 2e-13 Identities = 201/299 (67%), Gaps = 5/299 (2%) Strand=Plus/Minus Query 9704 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCC 9763 ||||||||| ||||||||| |||||||||| || ||||||||||| ||| | || Sbjct 693 CGTCAACAAGGTCATCCTCATCGGCAATCTGGGCCGCGACCCGGAAATCCGTTCGCTGAA 634 Query 9764 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTACAAGGACAAAGC 9823 | ||||||| || ||||| | ||| |||| || | || | ||||| || Sbjct 633 CAACGGCGACCGCGTCGCCAACCTGCGCATCGCCACCTCGGAAACCTGGCGCGACAAGGC 574 Query 9824 CAGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTCTTC---GGCCGCCT 9880 || |||||| ||| ||| ||||||||||||| || | | ||||| | ||| Sbjct 573 CACCGGCGAGCGCAAGGAAAAGACCGAGTGGCACTCGGTTGTCATCTTCAATGAGAACCT 514 Query 9881 CGCCGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCG-AGGGGCGCA 9939 |||| | | | || || | ||| ||||| | ||| || |||| ||| || | Sbjct 513 CGCCAAAGTGGCTGAGCAGTATCTGAAGAAGGGTTCCAAGGTTTATATCGAAGGTGCAC- 455 Query 9940 TCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATCGTC 9998 || | || || |||||||||||||| ||| || || |||||||||||||| Sbjct 454 TCCAGACACGTAAGTGGCAGGATCAGCAGGGCGTCGAGAAGTATTCGACCGAGATCGTC 396 >seq94 Length=41210 Score = 87.8 bits (96), Expect = 7e-13 Identities = 161/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 9704 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCC 9763 ||||||||| ||||||||| ||||||| || || |||||||||| |||| || Sbjct 29208 CGTCAACAAGGTCATCCTCATCGGCAACCTGGGCAAGGACCCGGAAATCCGCACGCTGAA 29267 Query 9764 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTACAAGGACAAAGC 9823 ||||||||| || ||||| | ||| |||| ||| | || | | ||||| || Sbjct 29268 CAGCGGCGACCGCGTCGCCAACCTGCGCATCGCCACGTCGGAGCAATGGCGCGACAAGGC 29327 Query 9824 CAGCGGCGACTTCAAAGAAGTGACCGAGTGGCAC-CG--CGTCGCCTTCTTCGGCCGCCT 9880 || |||||| ||| ||| ||||||||||||| || |||| ||| || | | Sbjct 29328 CACCGGCGAGCGCAAGGAAAAGACCGAGTGGCACGCGGTCGTCATTTTCAACGAGAACAT 29387 Query 9881 CGCCGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCGAGGG 9934 || | || | | ||| | ||||| |||||| | | || ||||||||||| Sbjct 29388 CGTCAAGGTGGCCGAGAACTACCTGAAGAAGGGCTCGACCGTTTACATCGAGGG 29441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201317158971330