Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq607 107 5e-19 >seq607 Length=3148 Score = 107 bits (118), Expect = 5e-19 Identities = 197/286 (69%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 30293 CTCAGCGCCATACGCCGTGATCCATTCAATGAGACTGGCACATCGCTTCTTGCTCAGTTT 30352 ||| ||||| ||||| ||||| || | || || || || ||||| ||| || | Sbjct 2822 CTCGGCGCCGAACGCCTGAATCCACTCCAGCAGGCTCGCGCACTGCTTCACGCTGAGCTG 2763 Query 30353 GCTGGTCTGCGTGTAGAGGACATCGATTCCCTGACCGTCGATGGCCGGGATCATGTGCGG 30412 ||| || || ||| | ||| |||| || | ||||||| || || |||| || || Sbjct 2762 GCTTGTGCGCTCGTACACGACGTCGAAGCCGTTGCCGTCGAGCGCTGGTATCAGTTGAGG 2703 Query 30413 ATTCTTGCCTTCCTCCCGTAGCCACGCGGCTACACAGAGGCGCTTCCAGACCGATGCCGA 30472 | | ||| ||| || ||||| ||||| |||||||||||||| | | | || Sbjct 2702 CTGTTCGCCGCTCTCACGCAGCCAGGCGGCCGTCAGGAGGCGCTTCCAGATC-AGGACGT 2644 Query 30473 CC-ATTTCTGCCCGGCGTGGTCCACTTGCTCGGCGAGATCCTTGAGCATGGCGTGGAGCT 30531 || | |||| |||||||| || || |||| ||||| ||| || ||||||||||| Sbjct 2643 CCCACTTCTTGCCGGCGTGCTCGACCTGCTTGGCGATATCGGACAGGCAGGCGTGGAGCT 2584 Query 30532 TCTTGTTCTGCTCGTCCGTCCGATCCGGCTCGCTGATGGTGACCTT 30577 |||||||||||||| | | || ||| | || ||||| || ||| Sbjct 2583 TCTTGTTCTGCTCGCCGCTGCGGTCCTGGTCCTTGATGACGATCTT 2538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136480266464220