Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5 311 4e-80 seq15 221 6e-53 >seq5 Length=1449561 Score = 311 bits (344), Expect = 4e-80 Identities = 898/1359 (66%), Gaps = 66/1359 (5%) Strand=Plus/Minus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 ||| ||||||||||| || | ||| || | || |||||||| | |||||||| | || Sbjct 1213417 AAAATCTCCAGACAATACCCGTCTCATATACAAATTTGAAGTATAAGGTTCAAATGACTC 1213358 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 |||||| || || ||||||| ||| ||||||||||||||| |||| || | ||||| Sbjct 1213357 ATTATTACCAAAAATTTGAGCAGTTGATGCTGTTGGCATTGGAGCTACCAACAATGAATT 1213298 Query 25135 TCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC---TAAATTATTATC 25191 ||| | ||||||||| ||| | || ||||||| |||||| ||||||| | Sbjct 1213297 TCTTATACCATATTTTCTAATTTTTTCTTTTAATAATGACCAATCCCATAAATTACT--- 1213241 Query 25192 TAACTCGA-TATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCTGCAGGCGATT 25250 | || || | || |||||||| ||||||| | |||| | | || | || Sbjct 1213240 ----TGGAGTAACTTTCC---ATAAATCATATTGTAAAATGCCACGAGATACAAGAGAAC 1213188 Query 25251 GATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCTAACGCAG 25310 ||| ||||| ||| ||| | | | || | || ||| || || ||| Sbjct 1213187 CTTCATAAGTTTCATAAGGACCATATTCTTCAGCTAATTCACATGAAGCTTCCAATGCAC 1213128 Query 25311 CATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCATCGAAAG 25370 ||| ||| || ||||||| || |||||||||| ||||||| | | || | | Sbjct 1213127 CATGATATATTGTTTCAAATATTTTTTTGTTTAAATCTTTAGCTTGTGAAGAAGCGTAGG 1213068 Query 25371 CAATTTCCATTAAGGCGAAC-GTATCTGCTAATCCCTGAACTCCTAATCCAACTGGACGA 25429 | | || ||| || |||||||| ||||| ||||| || | |||| |||||| Sbjct 1213067 GA-TATCTTAAAAGTATAAAAGTATCTGCCAATCCTTGAACACCAATGCCAATAGGACGA 1213009 Query 25430 TGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATTTGTATCGATCACATTA 25489 ||||| |||| ||| ||||||| | |||||| ||||| |||| || | ||| Sbjct 1213008 TGTTTCATATTTGATATACGAGTTTCTTCTAATGGATAATAATTTATATCTATTATCTTA 1212949 Query 25490 TCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTCAAT-AAAGTCAAAATAAGG 25548 | | ||| ||| | ||| || || ||||| | || | | ||| | || ||| Sbjct 1212948 TTCAAATTTTTTGTTAAAAGTTTAGTA-ATTTTGTGAAGTTGTTTAAAATTGAATGAAG- 1212891 Query 25549 CTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGATTGATGCTAAATTACAAAC 25608 | ||| | | ||| ||| |||||| || |||||| || ||| | || ||||| || Sbjct 1212890 -TAATCCCATCT-TCTTTTTCAACAAATCTATTTAAAGCAATAGATCCCAAGTTACATAC 1212833 Query 25609 AGCTTGTTCTTTCCCGTCAGAATATTCATTGATCTCGATACATAAGTTGCTAGATTTGAT 25668 ||| ||| || |||||||| | || || ||||||| || | |||| || Sbjct 1212832 AGCGATTTCATTTGAAGAAGAATATTGAACAATTTCTGTACATAAATTTGAACATTTTAT 1212773 Query 25669 TACTCCATAATTCTTTTGATTA-TTGCATGTATTGACAAT-ATCTTTATATCCTAAATAT 25726 | ||| |||| ||||||||| || | | ||| ||||| ||||||||| | | || Sbjct 1212772 GATTCCTAAATTATTTTGATTACTTTTACG-ATT-ACAATGATCTTTATAAACCATGTAA 1212715 Query 25727 GGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAAG--TTCT---CTCGCTT 25781 || ||||| |||||||||||| | | | ||||| | ||| || ||| || | || Sbjct 1212714 GGTGTTCCAGTTTCAATTTGACTTTCACATATTTTTTGCCAGAGCATTCGTGCCTTGATT 1212655 Query 25782 TTACTTTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCGTA--AAGTTCAACAAATTC 25839 | |||| || || | ||| ||| || | | | || ||||| ||||||| Sbjct 1212654 TGACTT-CTATA--ACGTTTT--TCATTTTCATATTTAACATATAAAGTTT--CAAATTC 1212602 Query 25840 TTG-----ATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATAATATTTGGA 25894 || | |||| || || | | | ||| | | || ||| Sbjct 1212601 TTCTCCCCAACTATTATC------AAGACCTGGACAT-----TCGTGA---------GGA 1212562 Query 25895 CAGAATAAATG-CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCA 25953 || | | |||| ||||| || || ||||| | |||||||||||| |||| ||| Sbjct 1212561 CACA-TCAATGACCAATAAGAATCCCTTTCAACACGTTTCATAAATAAATCAGGAACCCA 1212503 Query 25954 CATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATC 26013 | ||||||||||||| | || | ||||| || ||| || || |||| Sbjct 1212502 TAAACCATAAAATAAATCACGAGCACGTTCCTCTTCCGGACCTGTATTTTTCTTAAGATT 1212443 Query 26014 TAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCT 26073 ||| || | ||||||||||| ||||||||||| | ||| |||||||| ||| ||| Sbjct 1212442 TAAAAATTGAAAAATATCTGCATGCCATGGTTCAATATAAATAGCAAATGCTCCTGGTCT 1212383 Query 26074 TTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAAC 26133 ||| |||||||||||| || || | ||||| ||||| || ||| ||||| ||||| Sbjct 1212382 TTTATTTCCACCTTGATCAACATAACGAGCAGTATCATTAAATACTCGTAACATAGGAAC 1212323 Query 26134 TAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTG 26193 ||||||| |||||| ||| ||||| | | ||| |||||||| | | ||||| | Sbjct 1212322 TAATCCATTTGAAATTCCATTTGTTCCACTAATAAAAGATCCTGTGGCACGAATATTATT 1212263 Query 26194 AGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATC 26253 | || | ||| | |||||| || | ||||||||| ||||||| | || ||||| Sbjct 1212262 AACACTTAGACCAACTCCACCTGCACCTTTTGAAATTATAGCACAATTTTTAAGAGTATC 1212203 Query 26254 GAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGA 26313 |||| |||| ||| |||| | |||| |||||||||||| || || ||||| Sbjct 1212202 ATAAATACCTTCTATTGAATCATCCACCATTGTTAATAAAAAACATGATGACAATTGTCC 1212143 Query 26314 ATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATG 26352 | | |||||||| |||| ||||||| |||| ||||| Sbjct 1212142 TTTTGGTGTTCCTGCATTATATAATGTTGGTGATGCATG 1212104 >seq15 Length=622252 Score = 221 bits (244), Expect = 6e-53 Identities = 357/510 (70%), Gaps = 5/510 (1%) Strand=Plus/Minus Query 25899 ATAAATG-CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATT 25957 || |||| ||||| | || || ||||| | |||||| ||||| |||| ||| | Sbjct 203690 ATCAATGACCAATATGAATCTTTTTCAACACGTTTCATAAACAAATCAGGAACCCATAAA 203631 Query 25958 GCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAG 26017 |||| |||||||| | || | |||||| ||| ||| || || ||||| || Sbjct 203630 CCATAGAATAAATCACGAGCACGTTCCTCTTCTGGTCCTGTATTTTTCTTAAGATCCAAA 203571 Query 26018 AAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTT 26077 || || | |||||||| ||||||||||| ||||| || |||||| || ||| || Sbjct 203570 AATTCCATAATATCTGCATGCCATGGTTCCAAATAAATTGCAAAAGCTCCAGGTCTCTTA 203511 Query 26078 CCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAAT 26137 |||||||||||| || ||||||||||| | ||||||||| |||||||||| || ||| Sbjct 203510 TTTCCACCTTGATCAACATATCTTGCAGTATTGTTGAAAACTCTCAACATTGGTACCAAT 203451 Query 26138 CCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCA 26197 ||| |||| ||| || || | | ||| ||||| | | | |||| ||| || Sbjct 203450 CCATTTGATGTTCCATTAGTTCCACCAATAAATGATCCATTGGCACGAATACAATGAACA 203391 Query 26198 TGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAA 26257 | | || || || ||||| |||||||||| ||||| | | | |||||| || Sbjct 203390 TTTAATCCAATACCTCCAGCAGATTTTGAAATTAAAGCACATTGTTTCAATGTATCATAA 203331 Query 26258 ATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGA 26317 || |||| || ||| || |||| |||||| ||||| ||||| ||||| | | || Sbjct 203330 ATCCCTTCAATAGAATCTCCAGCCATTGTTAATAAGAAACATGAAGACAATTGTGGACGA 203271 Query 26318 GTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATA--ATATCCTTCACTCAAAG 26375 |||||||||| |||||||| ||| || | |||||| ||| | || || | || ||| Sbjct 203270 GTTGTTCCTGCATTAAATAGTGTTGGAGAAGCATGTGTAAACCATTTCTGTGACATAAAA 203211 Query 26376 CTGTATAAGTTTCAAGAACTTCATCGATAT 26405 ||||| ||||| | |||| ||| |||| Sbjct 203210 TTGTAT--GTTTCGATAACTGAATCAATAT 203183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253034418095750