Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq17 183 4e-41 >seq17 Length=497611 Score = 183 bits (202), Expect = 4e-41 Identities = 458/691 (66%), Gaps = 6/691 (1%) Strand=Plus/Plus Query 138182 TACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATG 138241 ||||||||| || || | || ||||| |||||||||||||| ||||||||||| ||||| Sbjct 408988 TACACCAATTGGTCCCATTCCTGGACCACCACCTCCATGTGGGATACAGAATGTTTTATG 409047 Query 138242 TAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGC 138301 | ||||| ||| | ||||| |||||| |||| ||| | || ||||| || || Sbjct 409048 AAGATTTAAATGTGAAACATCACTACCATAATCACCAGGTCTACATAATCCTACTTGAGC 409107 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATAT 138361 ||| | ||| || ||||| |||||||| || || ||||| |||||||| | |||| | Sbjct 409108 ATTGAAATTGGCTCCATCAAGATATACTTGTCCTCCATTTTCATGAACCTTACTACAAAC 409167 Query 138362 CTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA-CATG 138420 | || | | ||||| || ||||| || || ||||| |||| ||||||| || Sbjct 409168 ATCAACAATACTACTCTCAAAAACTCCATGTGTTGAAGGATAGGTAACCATAATAGCACC 409227 Query 138421 AGAGTTCA--AATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCC 138478 | || ||| |||| | | | |||||| | || |||||| | || || || Sbjct 409228 A-AGATCATCCTTGTACTTTTCA--GCTTTCATTGATAAATCTTTATAATTAATATTTCC 409284 Query 138479 ATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATT 138538 || |||| | | || || || || | ||||| || ||| ||||| Sbjct 409285 ATGTCTATCAGATTCAACTGGAACTACCTTGAAATTAGCCATTGAAGCTGAAGCTGGATT 409344 Query 138539 AGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCCTTG 138598 |||||||| ||||| ||| || || |||| ||||| || || | || || Sbjct 409345 GGTTCCATGAGCTGATGATGGAATAAGGCATATCTTTCTGTTTTCTTGACCAATAGATTT 409404 Query 138599 ATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGTTG 138658 | ||||| ||| || ||||| | ||| ||||||||||| | || ||| ||| ||||| Sbjct 409405 AAGATATCCTTTTATGGCTAATAATCCAGCATACTCACCATTTGCTCCACTGTTTGGTTG 409464 Query 138659 TAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGTCATCTATTAT 138718 | || | |||| | || || | ||||| | |||||| | || |||| | ||| Sbjct 409465 GAGGGAAAAGTTATCATATCCAGTAACCTCACAAAGCCATTTTTCCAAATCATTAAATAT 409524 Query 138719 CTTTTGATAACCCATGGTCTGTATCATAGGTGTATGTGGATGCACGTTGGCAAATTCTTC 138778 | | || || | | |||| || || | |||||| | || | || | Sbjct 409525 CCTCATGTATCCTTTTGCCTGTTCAATTGGAACAAATGGATGAATATTAGAAAGTGAAGG 409584 Query 138779 CCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTACCAAGTGG 138838 ||| | | || | || ||| ||||| ||||||| ||||||||| || ||| | ||| Sbjct 409585 CCAAGTAAGTGGTAACATTTCAGCTGCGGCATTTAATTTCATTGTACATGAACCTAATGG 409644 Query 138839 AACCATACCATTTACTAATGAGAAATCTTTA 138869 || ||| || || ||||| ||||||||| Sbjct 409645 AATCATTGAATGAACCAATGACAAATCTTTA 409675 Score = 113 bits (124), Expect = 5e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 139238 AATTCTTCTTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGA 139297 |||| ||||||| || || |||| || || | |||||||| | ||||| | | ||| Sbjct 410071 AATTTTTCTTGCAATCGCTTGTAATCTATGAGGTCCATGATAGACAGCATACATTGCAGC 410130 Query 139298 CATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAAT 139357 |||||||| | |||||||||||||| ||||| ||| ||| ||||| ||||||||||| Sbjct 410131 AATATTTGCTGGGAGTGCTTGTGCTGTACAGATATTAGAGGTAGCTTTATCTCTTCTAAT 410190 Query 139358 ATGCTGCTCTCTAGTTTGTAGTGCTAA 139384 ||| || || | ||||| || ||||| Sbjct 410191 ATGTTGTTCACGTGTTTGGAGAGCTAA 410217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578985300161200