Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq17 244 1e-59 seq400 102 1e-16 >seq17 Length=497611 Score = 244 bits (270), Expect = 1e-59 Identities = 516/769 (67%), Gaps = 37/769 (5%) Strand=Plus/Minus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 |||||||| || ||||||||||||||||| | || ||||| || ||| ||||||||| Sbjct 25320 TTTCCTGTTGCTATAACAAAATCATCAGGAACATCATGTTGGAGGATTCTCCACATAGCT 25261 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAA 47904 || ||||| || | ||||||||||| ||||| ||||||||||| |||| ||| | Sbjct 25260 TCAACATATTCACGTGCATGTCCCCAATCACGTTTAGCATCAAGATTACCTAATGATATA 25201 Query 47905 CAGTCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAA 47964 | ||||| ||| | ||| || ||||| || ||||| | || |||||| Sbjct 25200 CTCTCTTGTACACCAATACTTATTTTAGCTACAGCTCTAGTTATCTTTCTTGTAACAAAA 25141 Query 47965 GTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCG 48024 | | ||| | ||||||||| || |||||||| | ||| ||| |||| || | || || Sbjct 25140 TTATTACCTCTTCTTGGAGACTCGTGATTAAACAAAATTCCATTACAACCAAAGATACCA 25081 Query 48025 TATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGA 48084 || | ||||||||| || |||| |||||| | |||| | ||| || ||| | || ||| Sbjct 25080 TAAGCTTCACGATAATTTTTTATTATCCAAAATGCATACAATTTAGCGACAGCGTATGGA 25021 Query 48085 GAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGT 48144 | ||||||||| || || |||||| | |||||| | ||||| || || ||||||||| Sbjct 25020 CTTCTTGGATAGAATGGAGTTGTCTCTTTTTGTGGAATTTCTTGAACTTTTCCATAAAGT 24961 Query 48145 TCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCA-AGCAAACGGACTGC 48203 ||| || ||||||||||| | ||| ||| || | | | || ||| | ||| Sbjct 24960 TCAGATGTTGATGCTTGATAAAATTTAACTTTATGTTGTAAATTACAGGCAAC-AATTGC 24902 Query 48204 CTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAA 48263 ||||| | ||| | || || | ||||| | | |||| || || || | ||||| Sbjct 24901 ATCAAGTAATCTTAATGTTCCAACAGCATCAACTTCAGCAGTGTATTCTGGTAAATCAAA 24842 Query 48264 CGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTG 48323 ||| || |||||| ||||| |||||| |||||| || |||||| | | | Sbjct 24841 ACTAACTTTAACATGAGATTGTGCAGCAAGATGATAAATTTCTGTTGGTTGGA--TTTTA 24784 Query 48324 AATAAC-CCTCACTAA-ATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAAT--- 48378 ||| | || | ||| | || || ||||| | || |||||||| | || ||| Sbjct 24783 GATATCAACTTAATAAGACATGATGAATCTGTCATATCACCATAATGGAGTTGAAATGTG 24724 Query 48379 ------------TGATC--------------ATAAATGTGATCAATTCTATGTGTATTAA 48412 ||| | ||||||| | | || | ||| ||||| | Sbjct 24723 GAAGAACCTTTGTGAACATTTGGATCAGCATATAAATGGG--CTATACGATGAGTATTGA 24666 Query 48413 TTAAAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCAAGAAGAAGTTCTG 48472 | || | | ||| | |||||||||||| ||| || || |||| | | || | Sbjct 24665 ATGTTGATGATCTACGTATAATACCATGAACAGAATATCCTTTATCAATTAATAACTCAG 24606 Query 48473 CTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTAAAGCAACTTT 48521 |||| || ||||||||||| || || ||||| || || | ||||||||| Sbjct 24605 CTAAATAAGAACCATCTTGACCAGTGATACCGGTAATAATAGCAACTTT 24557 >seq400 Length=5312 Score = 102 bits (112), Expect = 1e-16 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACT 53800 ||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 340 TGGAGCCTAACGGATTCGAACCGATGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACT 399 Query 53801 GAGCTAATTCCCCAATCGGGG 53821 ||||||| |||| || ||| Sbjct 400 GAGCTAAGGCCCCTTTCAGGG 420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665479343189200