Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq15 109 7e-19 seq11 84.2 3e-11 seq7 84.2 3e-11 >seq15 Length=622252 Score = 109 bits (120), Expect = 7e-19 Identities = 444/686 (65%), Gaps = 24/686 (3%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || |||||||| ||||||||| ||||||||||| |||||| | || ||||| ||| | Sbjct 203833 GAAACTGGAACTCCATATATGGTTTACAAGGATCATTGTAATAGAAAAAGTAATCAACAA 203892 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 || ||||||||||| || | || |||||||| || |||||| | || || | | Sbjct 203893 AACTTGGGAACAATTAAATGTTCTAATCTTTGTACTGAAATTGTTGAATATTGTGCTCCA 203952 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAG-TATGTCAATGAAGA 76083 ||||| |||||||| ||||| | |||||| | | || | || | || || || Sbjct 203953 GATGAAGTTGCTGTTTGTAATTTAGGATCAATTG-CATTGAATAGATTCGTTGATATTGA 204011 Query 76084 G-ACTCGCA-----CTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAA 76137 | | ||| | ||| ||| | | |||||||| | | |||||| || | || Sbjct 204012 GAAAGGGCAACCATCATTTAATTTTAATCAACTTCATCTTGTTTCTAAGATTCTTGCTAA 204071 Query 76138 AAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTC 76194 |||| | || | | ||||| |||| |||||| || |||| || || || Sbjct 204072 AAATTTGAATAAAATTATTGATGTCAATTATTATCCTGTACCTGAG---GCAAAGAAATC 204128 Query 76195 TAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-TT 76253 || | |||| | || ||||| | ||||||||||| | || ||| ||||| | Sbjct 204129 AAACTTTAGACATCGCCCCATTGGAATTGGTGTTCAAGGATTAGCTGATTGTTTTATGCT 204188 Query 76254 TGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAA 76313 | || | || |||| || | ||||| || | ||| || ||||||| Sbjct 204189 TATG-AGATATCCATTCACATCTCCTCGGGCCAAAGAACTTAATAAGAAAATTTTTGAAA 204247 Query 76314 CCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTG--AAGCCCAAGGTTCCTA 76371 | || ||||| | | | ||||||| || ||||| |||| ||| | || | || Sbjct 204248 CTATTTATCATGGAGCTTTGGAGGCTTCCTGCGAATTAGCTGCTAAG--GATGGACCATA 204305 Query 76372 TGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGG 76431 ||| |||| | | || || || | || |||| | | || | |||||||| |||| | Sbjct 204306 TGAAACATATCATGGATCACCAGTTTCTAAAGGAATTTTACAATATGATATGT-GGAATG 204364 Query 76432 TGAAACCAAGCTCAACTA--CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGT 76489 | | |||||| | | || || |||| | | |||||| || || | ||| Sbjct 204365 TAACACCAAG-TAACTTATGGGATTGGGCTAAATTGAAGGAAAAAATTGCCAAGCATGGT 204423 Query 76490 CTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 76549 | | || ||||| | || ||||||||||| || || || || ||||| | || Sbjct 204424 GTAAGAAATTCCCTTTTATTAGCTCCAATGCCAACTGCTTCTACTGCCCAAATTCTAGGG 204483 Query 76550 AATAATGAATGCTTTGAACCATACAC 76575 |||||||||| |||||||||| || Sbjct 204484 AATAATGAATCTATTGAACCATATAC 204509 >seq11 Length=1024817 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 19017 ATGACGAATAGCATAGATTGTGTGCCATCATAATTGATGGATACAGTGCTTCAAAATCAA 19076 |||| | ||| || ||||| ||||| ||||||||||||||||| |||| ||||||||| Sbjct 441908 ATGAAGTATAACAAAGATTATGTGCAATCATAATTGATGGATATAGTGAAGCAAAATCAA 441849 Query 19077 GAGCGGTAATTGGAGTATAGTATGCACCCTTTTGTGCTTCAAGAACCGTAGCTCCCTCGT 19136 | | | |||||| || || ||| || || ||||| ||| ||||||||||| | Sbjct 441848 GTGTAGCAATTGGTTCATTATAAAAACCTCTTATTGGTTCAATAACAGTAGCTCCCTCAT 441789 Query 19137 A 19137 | Sbjct 441788 A 441788 >seq7 Length=1063407 Score = 84.2 bits (92), Expect = 3e-11 Identities = 246/371 (66%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || || || | || || ||| | || |||||| | ||||| ||||| Sbjct 753292 CCAGGAACTGGTAAAACATTACTTGCTAAAGCTACAGCTGGTGAAGCTAATGTTCCATTT 753233 Query 175375 ATCCAGTGC-TCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || | || |||| | | ||| | || ||||||||||| || || | || || Sbjct 753232 ATT-ACTGTATCTGGATCTGAATTTTTAGAAATGTTTGTTGGAGTAGGACCTGCTAGAGT 753174 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||| ||| | |||| ||| || | ||||| ||||||||| | || |||||||| || Sbjct 753173 TCGTGATATGTTTGCAATGGCTAGAAAAAATTCTCCATGTATTTTATTTATTGATGAAAT 753114 Query 175494 TGATGCGGTGGGCAAGCAA-CGCAGCGCT---GGTGGTATGCCAGCAAATGACGAGAGAG 175549 |||||| || || ||| || | || | | ||||||||| | || || || Sbjct 753113 TGATGCTGTAGG-AAGAAAGAGAAGTGGTAAAGGTGGTATGGGTGGTCATTCTGAACAAG 753055 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT--GACA-ATGAGACTGGCA 175606 || | ||| | |||||||| || || |||||||| ||| ||| | || || Sbjct 753054 AAAATACATTGAATCAACTCCTTGTTGAAATGGATGGATTTACAACAGAAGAATCTTCAG 752995 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGG 175666 || | ||||| || ||||| ||||| || ||||| | ||| || || | | |||| Sbjct 752994 TTATCGTTATAGCTGCCACAAATCGTGTAGATATTTTGGATAGTGCTCTTTTAAGACCGG 752935 Query 175667 GTCGTTTTGAT 175677 | || |||||| Sbjct 752934 GACGATTTGAT 752924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596556102612800