Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq400 100 3e-16 seq475 87.8 2e-12 seq101 86.0 7e-12 >seq400 Length=5312 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18009 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 18068 |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 412 GGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGAAT 353 Query 18069 CCGCTATTCTCCA 18081 ||| || ||||| Sbjct 352 CCGTTAGGCTCCA 340 >seq475 Length=4263 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 161242 TCAGTAGCTCAGCGGATAGAGCAACCGCCTTCTAAGCGGTTGGTCGCAGGTTCAAATCCT 161301 || ||||||||| |||||||||||| ||||||||| | ||||||||||||||| |||||| Sbjct 2247 TCCGTAGCTCAGTGGATAGAGCAACGGCCTTCTAATCCGTTGGTCGCAGGTTCGAATCCT 2188 Query 161302 GCC 161304 ||| Sbjct 2187 GCC 2185 >seq101 Length=33494 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18007 tCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 18066 |||||| ||||||||||||||||||||| ||| | ||| ||| || ||||||||||||| Sbjct 25834 TCGGGGCTTTAGCTCAGTTGGTAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGA 25893 Query 18067 GTCCGCTATTCTCCA 18081 ||||||| ||||| Sbjct 25894 CTCCGCTAAGCTCCA 25908 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 18008 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 ||||| ||||||||||||||||||||| ||| | ||| ||| || ||||||||||||| Sbjct 26002 CGGGGCTTTAGCTCAGTTGGTAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGAC 26061 Query 18068 TCCGCTATTCTCCA 18081 ||||||| ||||| Sbjct 26062 TCCGCTAAGCTCCA 26075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561235301764000