Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq547 120 5e-22 seq82 114 2e-20 seq29 111 3e-19 >seq547 Length=3469 Score = 120 bits (132), Expect = 5e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | || | ||| || || || ||||| || | ||||| | Sbjct 1607 CGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCCA 1666 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||||||||| || | | |||||||| || || ||||||||||| Sbjct 1667 TCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCTTTG 1726 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| ||| | || ||||| || || | |||||||| ||||| || Sbjct 1727 TCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATT 1786 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || |||| || || ||||| ||||||||| Sbjct 1787 GTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229 ||||| ||||||||| || || | ||||| ||| || | ||| ||||| |||||| Sbjct 1403 TCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAA 1462 Query 193230 ATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 || | | ||||| || ||||| || ||||| |||||||| || || | || | || Sbjct 1463 ATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTG 1522 Query 193290 AAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACA 193349 |||||||||||||| ||||| || ||||| || || || || |||| || || ||| Sbjct 1523 TCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACA 1582 Query 193350 AATATTTGCAT 193360 || || ||||| Sbjct 1583 AAAATCTGCAT 1593 >seq82 Length=59906 Score = 114 bits (126), Expect = 2e-20 Identities = 119/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| || | | ||||| |||||||| |||||||| || ||||| ||||| | Sbjct 47880 CCAGCAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGAC 47821 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| |||||||||||| | ||||||||| ||||| |||||||| || || || Sbjct 47820 TTGACATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAGA 47761 Query 193341 GTTTTTACAAATATTTGCATTTTATTAGTAAAATA 193375 ||||| || || ||||||| | ||| ||||||| Sbjct 47760 GTTTTGACGAAGATTTGCA--TGATTCCTAAAATA 47728 >seq29 Length=268433 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229 ||||| ||||||||| || || | ||||| ||| || | ||| ||||| |||||| Sbjct 198352 TCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAA 198411 Query 193230 ATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 || | | ||||| || ||||| || ||||| |||||||| || || | || | || Sbjct 198412 ATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTG 198471 Query 193290 AAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACA 193349 |||||||||||||| ||||| || ||||| || || || || |||| || || ||| Sbjct 198472 TCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACA 198531 Query 193350 AATATTTGCAT 193360 || || ||||| Sbjct 198532 AAAATCTGCAT 198542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899634045319200