Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq39 143 4e-29 seq547 120 4e-22 seq29 120 4e-22 >seq39 Length=206625 Score = 143 bits (158), Expect = 4e-29 Identities = 474/719 (66%), Gaps = 27/719 (4%) Strand=Plus/Plus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATA--TTAAATTCATAAAATCAA 17936 ||||| || || |||||||||||||||||||| | ||| | || | ||| ||||||| Sbjct 48674 ACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGTTTAC--CATGAAATCAA 48731 Query 17937 ATGGATTAGTGGTTTTATAATATTTTT--CTTGTATTAATTCGTATAATAATCTATCTGC 17994 ||||||| | |||||| |||||| | ||| ||| ||| ||| | ||| || Sbjct 48732 ATGGATTTTTAACCTTATAA-ATTTTTGGCATGT-TTAGTTCAGTTAAAAGGTGATCAGC 48789 Query 17995 TACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA-AGGTA 18053 ||| |||| | || |||| || |||||||||| | | | | || ||| | Sbjct 48790 AACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCA-TATCAACAGGAA 48848 Query 18054 GAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATT-ACC 18112 |||||||| | | | |||| ||||| || || |||| | | | ||||| || || || Sbjct 48849 GAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAATTAT-TTCATGCACA 48907 Query 18113 CTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTG 18172 | | | | |||||| | | | || || || | | || |||||||| | Sbjct 48908 CGCTCTACAGACGGTTTATTCTCAAGATAACTA-AACATGAGA--CAAGCAAAATCTCTA 48964 Query 18173 TGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACG--TTAACCCGGGCATTATAC 18230 ||||| |||||||||||||| |||||||| || | || | || || ||||||| | Sbjct 48965 TGTAATCCTTCATCTCTGGAGATTAATTCATT--TGAATGACACAAACCTGGCATTAATC 49022 Query 18231 CTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGC 18290 | | |||||||| |||||| || || || ||| || ||| || ||||| || ||||| Sbjct 49023 CACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCCTTCAACAG 49082 Query 18291 ACGCGAACGCTATTAATCTTTCAGCAAAA-CTGTAT--TTATTGCTCAGTATCCATTTTT 18347 || || || || | | ||| ||||| || || |||| | | |||||| || Sbjct 49083 CGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTT---AATCCATCTTA 49139 Query 18348 GTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCT-CTATAGCATTAAACAAATCA 18406 ||||| || | | ||| | | ||||| || |||||| || | | | Sbjct 49140 AAGCCCAATCAGCCTTCTTCTTGATA-AATTCAAACTCTGTTAAAGCATTGAAAAGCTTA 49198 Query 18407 TCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGT 18466 | | |||| | | || ||||| || || |||||| |||||||| ||| ||| Sbjct 49199 TTTCTTTCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCACTATGA 49258 Query 18467 ATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCG 18526 || | |||||||| || ||||| | |||||| | | || || || ||| | || Sbjct 49259 ATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGGACTTCT 49318 Query 18527 CTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGC 18585 | |||||||||| |||||||| ||||| || || || || | || || || || || Sbjct 49319 TTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAGAAGGC 49377 >seq547 Length=3469 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || || |||||||| || || || | || || ||| ||| Sbjct 1593 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 1534 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| || || || |||||||| ||||| || |||||||| ||| Sbjct 1533 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 1474 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| || ||||| || |||||| |||||| | || ||||||||| Sbjct 1473 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 1414 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||| || || Sbjct 1413 ATTCAAAAAGAATCAACCCTTCACTTGGT 1385 Score = 111 bits (122), Expect = 2e-19 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || || ||||||||||| ||||| | ||||| ||| || Sbjct 1822 AATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATC 1763 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||||| ||| || || ||||| |||||||| || || ||||| || Sbjct 1762 TGACACTATCGACAACGTCAAATCCAAGATTCAAGACAAAGAAGGAATCCCACCAGATCA 1703 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | |||||| || || || |||||| |||||| | || || || | Sbjct 1702 ACAACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACA- 1644 Query 156002 TATATCCAAA--GAGGCGACGCTTCAT 156026 | ||||||| ||| | || || ||| Sbjct 1643 -ACATCCAAAAGGAGTCAACTCTCCAT 1618 Score = 89.7 bits (98), Expect = 8e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || ||||| || || ||||| || | ||||| || ||| Sbjct 2254 ATGCAAATCTTTGTTAAGACTTTGACAGGGAAGACTATAACGCTTGAAGTTGAGCCTTCA 2195 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||| || || ||||| ||||| || || ||||| ||| Sbjct 2194 GACACTATTGATAACGTCAAGGCTAAGATCCAGGATAAGGAAGGAATTCCACCAGACCAA 2135 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 |||||||| || | ||| |||| Sbjct 2134 CAAAGATTAATCTTTGCAGGTA 2113 >seq29 Length=268433 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || || |||||||| || || || | || || ||| ||| Sbjct 198542 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 198483 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| || || || |||||||| ||||| || |||||||| ||| Sbjct 198482 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 198423 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| || ||||| || |||||| |||||| | || ||||||||| Sbjct 198422 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 198363 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||| || || Sbjct 198362 ATTCAAAAAGAATCAACCCTTCACTTGGT 198334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731855441396000