Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq39 149 1e-30 seq547 138 2e-27 seq29 113 9e-20 seq82 93.3 8e-14 seq33 86.0 1e-11 >seq39 Length=206625 Score = 149 bits (164), Expect = 1e-30 Identities = 435/667 (65%), Gaps = 13/667 (2%) Strand=Plus/Plus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA-TACATATAATA 49650 ||| ||||||||||||||||| |||||| |||||| | | | | | || ||| | Sbjct 48721 CATGAAATCAAATGGATTTTTAACCTTATAA-ATTTTTGGCATGTTTAGTTCAGTTAAAA 48779 Query 49651 ATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATT 49710 ||| || ||| |||||| || |||||||| |||||||||| ||| || Sbjct 48780 GGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACC-AATCATA 48838 Query 49711 TAAATGGTAAT-GCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc 49769 | || | || |||||| | | |||| || || ||||| ||||| | | ||||||| Sbjct 48839 TCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAATTATT 48898 Query 49770 ataattatattattttttgataatttatatttaatatgattcgcatatattaaACATGCA 49829 | | | | | || ||||| | || || | | | | || | ||| ||| Sbjct 48899 TCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACT---AAACATGAGACAAGCA 48955 Query 49830 AAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGC 49889 ||||| ||||||| || || || || || || |||||||| | | || |||||| Sbjct 48956 AAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGGC 49015 Query 49890 ATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCC 49949 |||||||| | ||||| | |||||| ||||| |||||| || ||| || ||||| || Sbjct 49016 ATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCCT 49075 Query 49950 TCGACACACGCAAATGCTATTATTCTTGCTCC-AAACATTAAT--TTATCATCTAATATC 50006 || ||| ||||| || || || | | |||| ||| || || ||||| | || ||| Sbjct 49076 TCAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGT-TA--ATC 49132 Query 50007 CAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 50066 || ||| ||||||||| || || || |||||| | | | | || ||| || || Sbjct 49133 CATCTTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAACTCTGTTAAAGCATTGAAA 49192 Query 50067 AATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCA 50126 | | |||| |||||| ||||| |||||||| ||| Sbjct 49193 AGCTTATTTCTTTCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCA 49252 Query 50127 GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGA 50186 ||| | | |||||||| ||||||||| |||||| | |||||| | || Sbjct 49253 CTATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGG 49312 Query 50187 ACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAG 50246 ||||| | |||| |||||| ||||| ||| ||||| ||||| || || || ||| Sbjct 49313 ACTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAG 49372 Query 50247 AATGCTA 50253 || |||| Sbjct 49373 AAGGCTA 49379 >seq547 Length=3469 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | |||||| | || | ||| | ||| | ||| || ||| || || ||| Sbjct 1592 ATACCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCA 1651 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||| || |||||||| | | |||||||| ||| Sbjct 1652 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGT 1711 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || ||| || || |||| || || | ||| Sbjct 1712 GGGATTCCTTCTTTGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCA 1771 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| |||||||| ||||| |||||||| || |||| ||| || |||||| Sbjct 1772 ACTTCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 Score = 113 bits (124), Expect = 9e-20 Identities = 171/242 (71%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 192295 TTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAG 192354 |||| || || | | ||||| | |||||| | || || || | || | ||||| Sbjct 1353 TTTA-TTGAAAATTTCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGA 1411 Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 |||||||||||||| | |||| | |||| || | ||| || |||||||| || | | Sbjct 1412 ATATTATAATCAGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGT 1471 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || || || || ||||| |||||||| || || || || || |||| | Sbjct 1472 TGTTGGTCTGGAGGGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTA 1531 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| || || ||||| || || || |||||||| || |||| ||| |||||| Sbjct 1532 TCGGAAGGTTCAACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGC 1591 Query 192535 AT 192536 || Sbjct 1592 AT 1593 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| |||||||||||||| ||||| || ||||| |||||||| ||||| || || ||| Sbjct 2113 TACCTGCAAAGATTAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGGATCTTAG 2172 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || || ||| |||| ||||| | || ||||| || || || || || || || | Sbjct 2173 CCTTGACGTTATCAATAGTGTCTGAAGGCTCAACTTCAAGCGTTATAGTCTTCCCTGTCA 2232 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | || |||| ||| || ||||| Sbjct 2233 AAGTCTTAACAAAGATTTGCAT 2254 >seq29 Length=268433 Score = 113 bits (124), Expect = 9e-20 Identities = 171/242 (71%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 192295 TTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAG 192354 |||| || || | | ||||| | |||||| | || || || | || | ||||| Sbjct 198302 TTTA-TTGAAAATTTCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGA 198360 Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 |||||||||||||| | |||| | |||| || | ||| || |||||||| || | | Sbjct 198361 ATATTATAATCAGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGT 198420 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || || || || ||||| |||||||| || || || || || |||| | Sbjct 198421 TGTTGGTCTGGAGGGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTA 198480 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| || || ||||| || || || |||||||| || |||| ||| |||||| Sbjct 198481 TCGGAAGGTTCAACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGC 198540 Query 192535 AT 192536 || Sbjct 198541 AT 198542 >seq82 Length=59906 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 |||||||||||| | | ||||| ||||| || |||||||| || ||||| |||||| Sbjct 47881 ACCAGCAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGA 47822 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 || |||||| |||| ||| || | || ||||| ||||| || ||||| ||||| | Sbjct 47821 CTTGACATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAG 47762 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||||| | || || ||||| Sbjct 47761 AGTTTTGACGAAGATTTGCAT 47741 >seq33 Length=225032 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/161 (72%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 263648 AAATAATTGGATTACCAAAGGGATTACATGGATTTCATATACACGAATATGGAGATTTAA 263707 |||||| |||||| | | || |||||||| |||||||| || ||||||| || | || Sbjct 4545 AAATAAAAGGATTAACGGAAGGTTTACATGGTTTTCATATCCATCAATATGGGGACTCAA 4486 Query 263708 GCAATGGATGTACGTCAGCTGGTGAACATTATAATCCTTTTAATAGAAACCATGGTGATA 263767 |||||| |||| || ||||| ||||| |||||| || |||| | ||||||| Sbjct 4485 CCAATGGTTGTATATCTGCTGGACCACATTTTAATCCATTCAATAAGACTCATGGTGGAC 4426 Query 263768 TTACTGATCCTATTAATAGGCATTTAGGAGATTTAGGAAAT 263808 |||||| ||| | ||| | || |||||||||||| Sbjct 4425 CAACTGATGAAGTTA---GACATGTGGGTGATTTAGGAAAT 4388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984457169293500