Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq39 187 5e-42 seq547 113 8e-20 seq29 113 8e-20 seq82 102 1e-16 seq33 95.1 2e-14 >seq39 Length=206625 Score = 187 bits (206), Expect = 5e-42 Identities = 395/578 (68%), Gaps = 16/578 (3%) Strand=Plus/Plus Query 38772 TATAATTAAAAACTAGCATCTAAGGTAAAAAT---TGCATTATCACTATTCATCACATTG 38828 ||| |||||||| |||||| ||||||||| | | | | ||| | ||| || Sbjct 48596 TATCATTAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAACCCCA 48655 Query 38829 TATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATA-- 38886 ||| |||| |||||||||||||| ||||| || || ||||| |||||||| | ||| | Sbjct 48656 TATCTTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGG 48715 Query 38887 TTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA-TACA 38945 || | ||| ||||||||||||||||| |||||| |||||| | | | | | || Sbjct 48716 TTTAC--CATGAAATCAAATGGATTTTTAACCTTATAA-ATTTTTGGCATGTTTAGTTCA 48772 Query 38946 TATAATAATCTATCGGCCACAAATTCAACATATTGTA-ACATTAATTCACAATTCATACC 39004 ||| | ||| || ||| |||||| || ||| |||||||| |||||||||| Sbjct 48773 GTTAAAAGGTGATCAGCAACATATTCAATGTAG-GTACACATTAATCTTGAATTCATACC 48831 Query 39005 CAATAATTTAAATGGTAAT-GCATCATCAATAAATTCtttttctatttctacagcttgtt 39063 ||| || | || | || |||||| | | |||| || || ||||| ||||| | | Sbjct 48832 -AATCATATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTC 48890 Query 39064 taattatcataattatattattttttgataatttatatttaatatgattcgcatataGTA 39123 ||||||| | | | | | || ||||| | || || | | | | | | Sbjct 48891 TAATTATTTCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACT---AAACATGA 48947 Query 39124 AACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 39183 ||| |||||||| ||||||| ||||| || || || || |||||||| | | | Sbjct 48948 GACAAGCAAAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACA 49007 Query 39184 ATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 39243 | |||||||||||||| | ||||| | |||||| ||||| |||||| || ||| || | Sbjct 49008 AACCTGGCATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAA 49067 Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA 39303 |||| || || ||| ||||| || || || | | ||||||| | || | ||| Sbjct 49068 ATATTCCTTCAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGT 49127 Query 39304 AAATCCAATTTATGGCCCAATCTGCtttttttttGATA 39341 |||||| ||| |||||||| || || || |||||| Sbjct 49128 TAATCCATCTTAAAGCCCAATCAGCCTTCTTCTTGATA 49165 >seq547 Length=3469 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || || || | || | ||||| |||||||||||| || Sbjct 1367 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAA 1426 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | | || || | ||| || ||||||||||| | | |||||||| || || Sbjct 1427 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGG 1486 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| |||||||| || || || || || |||||||| || | ||| || Sbjct 1487 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACC 1546 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || |||||||| || |||| || |||||||| Sbjct 1547 TCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 1593 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || | ||| | ||| | ||| || || || || || Sbjct 1592 ATACCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCA 1651 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || | |||||| || ||||| || | | ||||| || ||| Sbjct 1652 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGT 1711 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || || ||| || || ||||| || || | ||| Sbjct 1712 GGGATTCCTTCTTTGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCA 1771 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| |||||||| ||||| |||||||| || |||| || || |||||| Sbjct 1772 ACTTCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 >seq29 Length=268433 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || || || | || | ||||| |||||||||||| || Sbjct 198316 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAA 198375 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | | || || | ||| || ||||||||||| | | |||||||| || || Sbjct 198376 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGG 198435 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| |||||||| || || || || || |||||||| || | ||| || Sbjct 198436 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACC 198495 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || |||||||| || |||| || |||||||| Sbjct 198496 TCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 198542 >seq82 Length=59906 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||||||||| || | | ||||||||||| || |||||||| || ||||| |||||| Sbjct 47881 ACCAGCAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGA 47822 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 || |||||| |||||||| || | || ||||| ||||| || ||||| ||||| | Sbjct 47821 CTTGACATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAG 47762 Query 172049 TGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || ||||| Sbjct 47761 AGTTTTGACGAAGATTTGCAT 47741 >seq33 Length=225032 Score = 95.1 bits (104), Expect = 2e-14 Identities = 119/163 (73%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 239429 AAATAATTGGATTATCAAAGGGATTACATGGATTTCATATACACGAATATGGAGATTTAA 239488 |||||| |||||| | | || |||||||| |||||||| || ||||||| || | || Sbjct 4545 AAATAAAAGGATTAACGGAAGGTTTACATGGTTTTCATATCCATCAATATGGGGACTCAA 4486 Query 239489 GCAATGGTTGCACATCAGCTGGTGAACATTATAATCCTTTTAATAGAATCCATGGTGATA 239548 ||||||||| | ||| ||||| ||||| |||||| || |||| | ||||||| Sbjct 4485 CCAATGGTTGTATATCTGCTGGACCACATTTTAATCCATTCAATAAGACTCATGGTGGAC 4426 Query 239549 TTACTGATCCTATTAATAGGCATTTAGGAGATTTAGGAAATAT 239591 |||||| ||| | ||| | || |||||||||||||| Sbjct 4425 CAACTGATGAAGTTA---GACATGTGGGTGATTTAGGAAATAT 4386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905115521298000