Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq15 194 5e-44 seq7 176 1e-38 seq8 118 3e-21 seq1 100 8e-16 seq6 93.3 1e-13 seq24 89.7 2e-12 >seq15 Length=622252 Score = 194 bits (214), Expect = 5e-44 Identities = 496/747 (66%), Gaps = 11/747 (1%) Strand=Plus/Minus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 ||||| ||||| ||| || || ||||||| || || || || || || | || ||| Sbjct 203942 TATTCAACAATTTCAGTACAAAGATTAGAACATTTAATTGTTCCCAAGTTTTGTTGATTA 203883 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 ||| || |||||| ||||||||| | || ||||| ||||| || || || || Sbjct 203882 CTTTTTCTATTACAATGATCCTTGTAAACCATATATGGAGTTCCAGTTTCTATTTGACTT 203823 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCT-TCCGA 155809 || ||||||| |||| | | | || || ||||| || |||| | || | || | Sbjct 203822 TCACAAATCTTTTGCCAAATAACCCTAGCCTTGATTTGTTTTCTGTAAC-GCTTCTCAGT 203764 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 |||||| || | |||| || | || || || ||||||| | ||| || || Sbjct 203763 CTCATACTTTGTGTACAATTTTTCAAATTCATCCCCCCAACAATCTTCTAATCCTGGACA 203704 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATACA 155927 | || || || | || |||||| | || | || ||||| | |||||| | | Sbjct 203703 TTCATGAGGACACATCAATGACCAATATGAAT--CTTTTTCAACACGTTTCATAAACAAA 203646 Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTG-ATT 155986 ||| |||| | | ||||||| | || | || | ||| || | | | || ||| Sbjct 203645 TCAGGAACCCATAAACCATAGAATAAATCACGAGCACGTTCCTCTTC-TGGTCCTGTATT 203587 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || |||||| |||||| | ||| ||| |||| ||| || ||||| Sbjct 203586 TTTCTTAAGATCCAAAAATTCCATAATATCTGCATGCCATGGTTCCAAATAAATTGCAAA 203527 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 | ||| ||||| ||||| ||||| ||||| | ||||| || ||||| || | Sbjct 203526 AGCTCCAGGTCTCTTATTTCCACCTTGATCAACATATCTTGCAGTATTGTTGAAAACTCT 203467 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 | ||| || | | ||||| || || ||||| ||||| | |||| || ||| | Sbjct 203466 CAACATTGGTACCAATCCATTTGATGTTCCATTAGTTCCACCAATAAATGATCCATTGGC 203407 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 |||| | ||||| || || ||||||||| || | |||| |||||| ||| |||| Sbjct 203406 ACGAATACAATGAACATTTAATCCAATACCTCCAGCAGATTTTGAAATTAAAGCACATTG 203347 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 || | |||| |||| |||||||||||||| | |||||| || || | || || Sbjct 203346 TTTCAATGTATCATAAATCCCTTCAATAGAATCTCCAGCCATTGTTAATAAGAAACATGA 203287 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | ||||| || || | |||||| || || |||||||| || | ||||| |||| | Sbjct 203286 AGACAATTGTGGACGAGTTGTTCCTGCATTAAATAGTGTTGGAGAAGCATGTGTAAACCA 203227 Query 156344 CTTATTAGACATATAATCGTATGTCTC 156370 || | |||||| ||| |||||| || Sbjct 203226 TTTCTGTGACATAAAATTGTATGTTTC 203200 >seq7 Length=1063407 Score = 176 bits (194), Expect = 1e-38 Identities = 255/355 (72%), Gaps = 5/355 (1%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || || ||| | || |||||||||||||| ||||| || | | ||| |||||||||| | Sbjct 753090 CTTCTCTTTCTTCCTACAGCATCAATTTCATCAATAAATAAAATACATGGAGAATTTTTT 753149 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 || || |||||||| | || | || | | | ||| | |||||| ||||||||| | Sbjct 753150 CTAGCCATTGCAAACATATCACGAACTCTAGCAGGTCCTACTCCAACAAACATTTCTAAA 753209 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 |||||||| | ||||| ||| |||| ||||| ||||| || ||| || | || Sbjct 753210 AATTCAGATCCAGATACAGTAATAAATGGAACATTAGCTTCACCAGCTGTAGCTTTAGCA 753269 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC 289257 || | ||| ||||| ||||| |||||||| | || |||| ||||||| ||| || Sbjct 753270 AGTAATGTTTTACCAGTTCCTGGTGGTCCAGTAAGAAGTGCTCCTTTTGGTATTTTAGCT 753329 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAA--AAATTCTACAATTTCCTCAAGTTCAT 289315 ||| | ||||||| | ||| | ||||| ||||| |||| |||| || |||| Sbjct 753330 CCAAGATTTTTATATTGAGCTGGG-TTTTTAAGGAAATT-AACAAATTCCATAATTTCAA 753387 Query 289316 ATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCTT 289370 |||||| || ||||||||||| ||||| |||| || |||||||| ||||| Sbjct 753388 TTTTTGCTTCTTCACATCCTGCAACATCTTTAAAACAAACTTTAATATC-TTCTT 753441 >seq8 Length=1047892 Score = 118 bits (130), Expect = 3e-21 Identities = 260/383 (68%), Gaps = 9/383 (2%) Strand=Plus/Minus Query 106893 CATAATTATTTTTCATAGCAAAAGACGAACTCATACCATAGAAAAACTTGAACTTTTTAC 106952 ||| || || ||||| ||| | ||| ||||||||| || | || | ||||||| Sbjct 513426 CATGATGTTTCTTCATCGCAGTATCAGAAGACATACCATAAAACATTTTATATTTTTTAC 513367 Query 106953 CATCTTCCTCAATTAACTTACCTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCA 107012 ||| | ||||| || || |||| || ||||||||| ||||| | || |||| || Sbjct 513366 CATTCTTCTCAACTACCTCACCTCCTGATTGATCGTGTCCAGCAAAAAGTCCTCCAATCA 513307 Query 107013 TTACGAAATCAGCCCCGCCACCGAATGCTTTAGCCATATCACCAGGGCAAGTAATTCCAC 107072 | || |||||||| || |||| ||||||||||| | |||||| || ||| ||||| Sbjct 513306 TAACAAAATCAGCACCAGCACCAAATGCTTTAGCTACATCACCTGGATTTGTACATCCAC 513247 Query 107073 CATCACTAATAATATAAGT---TTTAT-CGATGCG-AG-ATTCGCACGCCTCTAATACAC 107126 ||||| | | || | || || || | ||| | || || |||| ||| | ||| Sbjct 513246 CATCA--GACATTACATGTCCATTCATACCATGAGCAGCATCAGCAC-ACTCAAGGACAG 513190 Query 107127 AAGAGAGTTGGGGCATACCAATACCTGTTTGAATTCTTGTAGTGCAAGCACTTCCACCAC 107186 ||| | ||| || ||||| ||| || | ||||||| || ||| || ||| || Sbjct 513189 CAGACAATTGTGGATAACCAACACCAGTCTTCTTTCTTGTGGTACAAACAGATCCTGGAC 513130 Query 107187 CGATACCAACTTTAACAATATCCATACCACAATCAATTAAATCTTGAACTCCCTCTTTAG 107246 | ||||| || ||||||| ||| ||| |||||| |||| ||| ||| || Sbjct 513129 CAATACCGACCTTAACAACATCAGCTCCAGTTAAAATTAATTCTTCAACCATTTCTCCAG 513070 Query 107247 TAGCGACATTACCAGCAATAATA 107269 || | ||||| || || |||||| Sbjct 513069 TAACAACATTTCCTGCCATAATA 513047 >seq1 Length=6158768 Score = 100 bits (110), Expect = 8e-16 Identities = 236/352 (67%), Gaps = 12/352 (3%) Strand=Plus/Plus Query 289015 TCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTT 289074 || || ||||||||||| | |||||||||||| ||||| |||||| ||| || | ||| Sbjct 452471 TCACTTCTTTTTTTACCTATAGCATCAATTTCATCAATATAAATCATACATGGTGCTTTT 452530 Query 289075 TGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCT 289134 ||| | || | | |||||| || | | | || || ||||| || | |||||| Sbjct 452531 TGTTTAGCCAATTTAAATAAATCACGCATTCTTGAAGCACCAAGGCCTCCTATCATTTCA 452590 Query 289135 ACAAATTCAGAAGCGGAT----ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGC 289190 | |||||| | | || ||| ||| |||| ||| ||| ||| | || | || Sbjct 452591 ATAAATTCTGTTCC--ATTAGCACT--AATAAATGGAACACTTGATTCAGCAGCAAGAGC 452646 Query 289191 CCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTAC 289250 | |||| | ||| ||||| ||| |||||||| | || | | ||||| || | Sbjct 452647 TTTTGCCAACAATGTTTTACCACATCCTGGTGGTCCTGTCATTATAGCACCCTTAGGAAG 452706 Query 289251 TTTTGCCCCAGCAGACT--TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCA 289308 ||| |||||| || | |||| || |||| | || ||| | ||||||| |||| Sbjct 452707 TTTAGCCCCA--AGTTTTGTATACTTAGAAGGGTTTTTCAAATAATCTACAAATTCCATT 452764 Query 289309 AGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAA 289360 | |||| |||||| |||| | || ||||| || ||| ||||||||| Sbjct 452765 ATTTCAATTTTTGCTTCATGTAAACCAGCTACGTCTTTAAATTTAATATTAA 452816 >seq6 Length=1300811 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 304029 TAAGTTGGGGTCAGGTGTAATTACAGAGCGAGCACTAAAATCAACACGCTTACCCATAAG 304088 ||| || || || |||||||| |||| || || |||||| ||||| || |||||||| Sbjct 1075120 TAAATTAGGATCTGGTGTAATGACAGTACGTGCTGAAAAATCTACACGTTTTCCCATAAG 1075061 Query 304089 ATTACCCCTAACACGACCGCCCTTACCGTTTAGCCTATCCTTGATTGCCTTCAGGGGGCG 304148 ||| || | || |||||| | ||||| |||| || | ||||||| || | || | Sbjct 1075060 ATTTCCACGAATACGACCTTCTTTACCCTTTAATCTTTGTTTGATTGATTTTAATGGTCT 1075001 Query 304149 ACCCGAACGCTGGGCTACAGCCGCAACGCCAGGAATCTTATTGTCTACCAGCGTCGCAAC 304208 || || ||| | | |||| |||| |||||||| ||| || || | || || || Sbjct 1075000 TCCAGATTTCTGTGTTGCAGCAGCAATACCAGGAATAGAATTATCAACAAATGTTGCTAC 1074941 Query 304209 ATAATATTGCAGCA 304222 || |||||| |||| Sbjct 1074940 ATGATATTGAAGCA 1074927 Score = 93.3 bits (102), Expect = 1e-13 Identities = 204/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || ||||||| || ||| | ||||||| || ||||| | | Sbjct 1076644 ATTTCTAACCGTTCCATCATAATTAACCATTACACTTTCCATAGCTTTAATTAATCTTCT 1076585 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||||| ||| || ||||||||||| |||||||| ||||| | | ||| || Sbjct 1076584 TTGAATATAACCTGTTTCAGCAGTTTTTACAGCAGTATCAATAAGACCTTCTCTACCTCC 1076525 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||||||||| | || ||||| || || ||| | | || | || || || Sbjct 1076524 CATAGCATGGAAGAAAAATTCAGCCGGTGTTAAACCTGCAAGATATGAATTTTCTACAAA 1076465 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 || | || || || || ||| ||| ||||| | | || | | | | Sbjct 1076464 TCCCTTAGATTCTGGACCATAATCATCTTTGAAAAAATGTGGTAAACTTCTATGCCTAAA 1076405 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || |||| ||||| || || ||||| || || ||||| | || | ||| | || || Sbjct 1076404 ACCAAATGGAATACGTTTACCTTCAACATTTTGTTGTCCTACACAAGCAATAACTTGTGA 1076345 Query 302838 AATATT 302843 |||||| Sbjct 1076344 AATATT 1076339 >seq24 Length=311514 Score = 89.7 bits (98), Expect = 2e-12 Identities = 262/400 (66%), Gaps = 13/400 (3%) Strand=Plus/Plus Query 380964 TGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAA 381023 ||| || || ||| | |||||||||| | | || || ||| | ||| | || | Sbjct 228489 TGTCAAGATTTGGGAACCTAATGGTAGTAGACAATTCTTGGATAATCTTGGATTTAC--A 228546 Query 381024 TAACGA--AGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCC 381081 ||||| ||| | || | ||||| ||||||||||||| |||||||||||| || Sbjct 228547 GAACGACCAGAGGGAGATTTAGGTCCAGTTTACGGATTTCAATGGAGACATTTTGGAGCT 228606 Query 381082 GATTATGATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATATC 381141 | ||||| |||| ||||| || || ||||| || || || || | | Sbjct 228607 AAATATGAAGGAGTTGATGCCGATTACACAGGAAAGGGAGTTGATCAATTGGCTCAGGTT 228666 Query 381142 ATAGACCAGCTAAAAAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCGTGG 381201 | || || | |||||| || | ||| ||| || || |||| | | || ||| Sbjct 228667 GTTGATCAAATTAAAAAT----AACCCAGA--TTCTCGAAGAATAATCTTATCAGCATGG 228720 Query 381202 AATCCTTGCCAGATTAATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCAAT 381261 ||||||| | || || |||| | | || || ||||||| ||| || || || Sbjct 228721 AATCCTTCTGATCTTGATTTAATGGTTCTCCCTCCATGCCATACTTTGGTTCAATTTTAT 228780 Query 381262 GTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTTGGTCTG 381321 ||| | ||| | |||||| ||| || ||||| || || || ||||| || || Sbjct 228781 GTTCAAGATGGAGA---GTTAAGCTGTCAATTGTATCAACGCAGTGGAGATGTAGGACTT 228837 Query 381322 GGTGTTCCATTCAATATTGCTTCGTATTCTATGCTTACTC 381361 || ||||| |||||||||||||| || ||| | || |||| Sbjct 228838 GGAGTTCCTTTCAATATTGCTTCTTACTCTCTTCTGACTC 228877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471783467629970