Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq400 100 3e-16 seq567 89.7 6e-13 seq475 87.8 2e-12 seq101 82.4 8e-11 >seq400 Length=5312 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 9773 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 9832 |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 412 GGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGAAT 353 Query 9833 CCGCTATTCTCCA 9845 ||| || ||||| Sbjct 352 CCGTTAGGCTCCA 340 >seq567 Length=3368 Score = 89.7 bits (98), Expect = 6e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 148127 TTTACGGGGTGTAGCTTAGCTTGGT-AGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGT 148185 ||| ||||||||||| |||| ||| | ||||| ||||||||||| ||||| ||||||| Sbjct 1469 TTTTCGGGGTGTAGCGTAGCCCGGTTATCGCGCCTGCTTTGGGAGCAGGAGGCCGCAGGT 1410 Query 148186 TCAAATCCTGCCACCCCGA 148204 || |||||||||||||||| Sbjct 1409 TCGAATCCTGCCACCCCGA 1391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 147057 CAGTAGCTCAGC-GGATAGAGCAACTGCCTTCTAAGCAGTTGGTCGCAGGTTCAAATCCT 147115 || ||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||| Sbjct 1361 CAATAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCTCAGGTTCGAATCCT 1302 Query 147116 G 147116 | Sbjct 1301 G 1301 >seq475 Length=4263 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 147056 TCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTTGGTCGCAGGTTCAAATCCT 147115 || ||||||||| |||||||||||| ||||||||| | ||||||||||||||| |||||| Sbjct 2247 TCCGTAGCTCAGTGGATAGAGCAACGGCCTTCTAATCCGTTGGTCGCAGGTTCGAATCCT 2188 Query 147116 GCC 147118 ||| Sbjct 2187 GCC 2185 >seq101 Length=33494 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 9832 |||| ||||||||||||||||||||| ||| | ||| ||| || ||||||||||||| | Sbjct 25836 GGGGCTTTAGCTCAGTTGGTAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGACT 25895 Query 9833 CCGCTATTCTCCA 9845 |||||| ||||| Sbjct 25896 CCGCTAAGCTCCA 25908 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 9773 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 9832 |||| ||||||||||||||||||||| ||| | ||| ||| || ||||||||||||| | Sbjct 26003 GGGGCTTTAGCTCAGTTGGTAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGACT 26062 Query 9833 CCGCTATTCTCCA 9845 |||||| ||||| Sbjct 26063 CCGCTAAGCTCCA 26075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549609964793200