Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq94 159 1e-34 seq148 147 7e-31 >seq94 Length=41210 Score = 159 bits (176), Expect = 1e-34 Identities = 193/263 (73%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31541 TTGCGGGTTTGCAGCTTGCCCTCGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCG 31600 |||||||| |||||| ||||||||||||||| |||| ||||| |||||||| | |||| Sbjct 29459 TTGCGGGTCTGCAGCGAGCCCTCGATGTAAACGGTCGAGCCCTTCTTCAGGTAGTTCTCG 29400 Query 31601 CAAACCTTGACGAGACCTTCGGTGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTG 31660 |||||||||| ||| |||| | |||||| ||||||||||| |||||| Sbjct 29399 GCCACCTTGACGATGTTCTCGTTGAAAATGACGACCGCGTGCCACTCGGTCTTTTCCTTG 29340 Query 31661 CGGTCGCCGCTGTCGCGGTCGCGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATG 31720 || |||||| || | ||||||||| || || || || | ||| ||| |||||| | Sbjct 29339 CGCTCGCCGGTGGCCTTGTCGCGCCATTGCTCCGACGTGGCGATGCGCAGGTTGGCGACG 29280 Query 31721 CTACCCCCGGCTTGTGTCTTTCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATG 31780 | | ||| | | | ||||||||||| || ||| || | |||||| || ||| Sbjct 29279 CGGTCGCCGCTGTTCAGCGTGCGGATTTCCGGGTCCTTGCCCAGGTTGCCGATGAGGATG 29220 Query 31781 ACTTTGTTGACGCTACCGGCCAT 31803 || ||||||||||| |||||||| Sbjct 29219 ACCTTGTTGACGCTGCCGGCCAT 29197 >seq148 Length=19139 Score = 147 bits (162), Expect = 7e-31 Identities = 197/272 (72%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 31534 CTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAACCTTCGATCCCTTTTTCAGGTA 31593 ||||||||| || || || || || ||||| |||||||| || ||||| ||||| || Sbjct 435 CTGCCACTTACGTGTCTGGAGTGCACCTTCGATATAAACCTTGGAACCCTTCTTCAGATA 494 Query 31594 TTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACGACGACGCTATGCCACTCGGTGCG 31653 ||||| || ||| |||| || |||||| ||| || ||||||||||| Sbjct 495 CTGCTCAGCCACTTTGGCGAGGTTCTCATTGAAGATGACAACCGAGTGCCACTCGGTCTT 554 Query 31654 CTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCT 31713 |||||||| |||||| || | |||||||||| |||| || || || | ||| ||| | Sbjct 555 TTCCTTGCGCTCGCCGGTGGCCTTGTCGCGCCAGGTTTCCGAGGTGGCGATGCGCAGGTT 614 Query 31714 GGCGATGCTACCCCCGGCTTGT--GTCTTTCGGATTTCCGGATCGGCGCCGAGATGGCCG 31771 ||||| || | ||| |||| | ||||||||||| ||| ||| |||| |||| Sbjct 615 GGCGACGCGGTCGCCG--TTGTTCAGCGAACGGATTTCCGGGTCGCGGCCCAGATTGCCG 672 Query 31772 ATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 || || ||||| ||||||||||| || ||||| Sbjct 673 ATGAGGATGACCTTGTTGACGCTGCCCGCCAT 704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169801150258080