Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq203 93.3 5e-13 >seq203 Length=12670 Score = 93.3 bits (102), Expect = 5e-13 Identities = 195/281 (69%), Gaps = 15/281 (5%) Strand=Plus/Plus Query 96600 CCCGACGAG-GACGTCGCCCTCGCCGCCGAGTTGGCCGCGTGCCCCAAGACCTTTGCCGA 96658 |||| || | |||| |||||| || || ||| ||| ||| || ||||| | ||||| Sbjct 1963 CCCGGCGCGCGACGCCGCCCTGGCGGCGGAGCTGGTCGCCAGCGCCAAGGACCGGGCCGA 2022 Query 96659 GAACCTCATGATCGTCGACCTGGTGCGCAACGACCTGAGCGTGTGCTGCG-CGCCCGGCA 96717 |||||| ||||||||||||||| |||||||||||||| ||| | || ||| ||||||| Sbjct 2023 GAACCTGATGATCGTCGACCTGATGCGCAACGACCTG-GCGCGGGCGGCGAGGCCCGGC- 2080 Query 96718 GCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGACCTACGCCGCCGTGCACCAGA 96777 ||| || | | || || ||| | | | | ||| | || | | ||||| || Sbjct 2081 ---TCG--GTCCGGGTCGAGCGGCTGTTCGAGCTGGAGCGCCACCCGACGGTGCATCATC 2135 Query 96778 TGGTGACCACCGTCGACGGCCTGCTCGACCGC---GGCCGGACGGCGCTCGACCTCGTGC 96834 |||| | || ||| || || | || |||| | ||| | | ||| || | || Sbjct 2136 TGGTCTCGACGGTCAGCGCCCAGGCCG-CCGCAGGGTTCGGTCCG-GCT-GAGGTGCTGG 2192 Query 96835 GCGCGGCCTTTCCGCCGGGCTCGATGACGGGCGCGCCCAAG 96875 ||||||||||| || |||||||| || || || |||||| Sbjct 2193 AGGCGGCCTTTCCCCCTGGCTCGATCACCGGGGCCCCCAAG 2233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106990662923770