Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq24 163 4e-35 seq5 107 2e-18 >seq24 Length=311514 Score = 163 bits (180), Expect = 4e-35 Identities = 402/597 (67%), Gaps = 17/597 (3%) Strand=Plus/Plus Query 172399 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 172458 ||||| | || ||| ||||| ||| ||| || | || || | ||| | |||| Sbjct 228431 AAGAATTGTTGTGGTTTATTTCTGGTAGTACTAATGCGAAGGTTTTGACTGAAAAGGGTG 228490 Query 172459 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 172518 | || ||||| | ||||||| | | |||| || ||| || ||||| ||| Sbjct 228491 TCAAGATTTGGGAACCTAATGGTAGTAGACAATTCTTGGATAATCTTGGATTTACAGAAC 228550 Query 172519 GAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 172578 || ||| || |||||||| ||| |||| |||||||||||||||||| || ||| ||| Sbjct 228551 GACCAGAGGGAGATTTAGGTCCAGTTTACGGATTTCAATGGAGACATTTTGGAGCTAAAT 228610 Query 172579 AT-ATCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATT 172637 || | || | |||| | |||||||||||| | ||||| || ||||| ||| | || Sbjct 228611 ATGAAGGAGT-TGATGCCGATTACACAGGAAAGGGAGTTGATCAATTGGCTCAGGTTGTT 228669 Query 172638 AAT-ACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAAT-TGAT-AG-TTGGAATGT 172693 || | ||| |||| |||||||| | |||| | |||| | || || |||||| Sbjct 228670 GATCAAATTA-AAAATAACCCAGATTCTCGAAGAA---TAATCTTATCAGCATGGAATCC 228725 Query 172694 ACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTCAG 172753 || | |||||| ||||||||| ||||| ||||||||||| | ||||||||||| Sbjct 228726 TTCTGATCTTGATTTAATGGTTCTCCCTCCATGCCATACTTTGGTTCAATTTTATGT--- 228782 Query 172754 aaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGT 172813 || | | ||| ||||| || |||||| | | ||| ||||| | || || Sbjct 228783 TCAAGATGGAGAGTTAAGCTGTCAATTGTATCAACGCAGTGGAGATGTAGGACTTGGAGT 228842 Query 172814 ACCTTATAATATTGGATTTTATTCATTTTTAATACTTGTGTTA--AGTAAATGGTGCAAT 172871 |||| ||||||| | ||| || || | | | | || || | || ||| | | Sbjct 228843 TCCTTTCAATATTGCTTCTTACTCTCTTCTGACTCATATGCTAGCAAAAATATGTGGATT 228902 Query 172872 TTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTT 172931 || |||| | ||| |||| ||| ||||||||| |||| | || ||||||||| Sbjct 228903 GGAA--GCAGGTGATTTTGTTCACACTATTGGAGATGCTCACATTTACAGCAATCATGTT 228960 Query 172932 GAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATTT 172988 ||| || ||||| |||||| | |||||||| | ||||||| | |||||| Sbjct 228961 GAAGCTCTAAAGACACAATTAGTTCGTGAACCATATCCATTTCCAACAATCAAATTT 229017 >seq5 Length=1449561 Score = 107 bits (118), Expect = 2e-18 Identities = 172/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 194599 GGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGT 194658 || |||| |||||| || |||||||| ||||| ||||||||||||||||||| | Sbjct 1297264 GGACCAATTTATTATCAAAAACTTAAACATATGGTATTGGATAAAATGCATGCTAGA--T 1297207 Query 194659 CA--TGGGCAAGTAACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAG 194716 || || | || || |||| || ||||| | | ||| | | | | ||| | Sbjct 1297206 CAAGAGGTCCTGTTGCTGTTTTAACACGTCAACCTACTGAAGGTAGAGCACGTGATGGTG 1297147 Query 194717 GTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAAT--T 194774 |||||||||| ||||||||||||| ||| ||| || ||| |||| || ||||| | Sbjct 1297146 GTTTAAGATTAGGAGAAATGGAAAGAGATTGTCTTATAGCTTATGGAGC--ATCAATGCT 1297089 Query 194775 CTTAAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATG 194834 |||| || ||| | | | | |||||||| |||||||| |||||||| ||| ||| Sbjct 1297088 TTTAATGGAGAGATTAATGGTATCTTCTGATCAATTTCAAGTTGATGTTTGTTCAGTATG 1297029 Query 194835 TGG 194837 ||| Sbjct 1297028 TGG 1297026 Score = 98.7 bits (108), Expect = 1e-15 Identities = 130/178 (73%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 165953 AAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACAA 166012 |||||||| |||||| ||| || | ||| | | |||| | |||||||||||| Sbjct 711806 AAGGTTGCCCAATTAGCTGGTGCAGTAGGAGAGATGTCTGCTTATCATCATGGTGAACAA 711747 Query 166013 AATTTATGTGAA-ACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 166071 |||| ||| || || || || || || ||||||| |||||| | |||||||| Sbjct 711746 TCTTTAA-TGATGACAATTATCAATTTGGCACAAGATTATGTTGGATCTAATAATATTAA 711688 Query 166072 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCT 166129 |||||| |||| ||||||||| ||||| ||| | ||||||| |||||||||||| Sbjct 711687 CTTACTTTTACCTATTGGTCAATTCGGTACTAGACTTCAAGGAGGAAAAGATTCTGCT 711630 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 194240 TACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTGTGGTATG 194298 |||| |||| || ||||||||| ||| || |||| ||||||||| || |||||| Sbjct 1209458 TACCACAAATTGGAGATAAATTTGCTTCTAGACATGG-TCAAAAAGGTACCATGGGTATG 1209516 Query 194299 ATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATC 194358 || ||| |||||||||||||||||||||| |||| | ||||||||||||||| Sbjct 1209517 ATGTATCGCCAAGAAGATATGCCATTTACAAAAGAAGGTTTATCACCAGATATTATTATT 1209576 Query 194359 AATCCAAATTGTATTCCGTCCAGAATGACCATT 194391 ||||| || | | || || ||||||| ||| Sbjct 1209577 AATCCTCATGCTGTACCATCTCGAATGACAATT 1209609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632475289922800