Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq547 136 4e-27 seq15 125 6e-24 seq5 98.7 9e-16 seq28 96.9 3e-15 >seq547 Length=3469 Score = 136 bits (150), Expect = 4e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || |||| || ||||| ||||| || ||||| ||| | | Sbjct 1821 ATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATCT 1762 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| ||||||||||||||||| || || |||||| Sbjct 1761 GACACTATCGACAACGTCAAATCCAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAA 1702 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| ||||| || || ||| |||| | || || || ||| Sbjct 1701 CAACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAC 1642 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || |||||||| || || || || Sbjct 1641 ATCCAAAAGGAGTCAACTCTCCA 1619 >seq15 Length=622252 Score = 125 bits (138), Expect = 6e-24 Identities = 1126/1802 (62%), Gaps = 60/1802 (3%) Strand=Plus/Minus Query 138151 GATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATT 138210 || ||||| || |||||||| || |||||| | |||||| | ||||| | ||||||||| Sbjct 204911 GACTTATCAACGGTAAACTTAATAGCATCAACAGCTGGTCTTGTTCTTAAGTAATACATT 204852 Query 138211 CCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTC 138270 || || ||||| ||| || ||| | | | || || ||| | || || || || Sbjct 204851 CCAGTCTTTAAACCACGTTTCCATCCATGGAAATGCATAGAACTACATACGGCATATGTT 204792 Query 138271 GGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATG 138330 ||||| || | | | |||| |||||| ||||| ||| |||| || |||||| Sbjct 204791 GGTTTTGCTACATGAAGATTAAGTGATTGAGATTGATCAATGTAAGCTCCACGATCAGCA 204732 Query 138331 GCCATGTTAATTAAATTTTTACTTTTCA----TCTCCCACACGGTCTTGTATAGATCACG 138386 ||||| | ||| | || ||||| | | ||||| || ||||| || || || Sbjct 204731 GCCATCTCAATGATATC----CTTTTGAGAAATTTCCCAAACAGTCTTATAAAGTTCCTT 204676 Query 138387 AATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATT 138446 |||||| |||||| || ||||||||||| || || | || || ||| Sbjct 204675 GATATGTGTTGGTATTCCAGCGATATTTTGAATTGAACCATTATTTGATATAATTTCATT 204616 Query 138447 TCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTAT 138506 | | || || | ||| || | | ||||| || || | |||| || | Sbjct 204615 CATAACTTCTTCACTCCACAAGTTAAGGTCAATCAAATCTTTAAGAAGATGAGGATTAAC 204556 Query 138507 GACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTG--GTGAAAGGCTCA 138564 | || || || || | | || ||||| |||||| | | | || | || ||| Sbjct 204555 AATTTGGAAGTCTCCAGAGAGAACACGACGT--GTAAATATATTAGAAGTATATGGTTCA 204498 Query 138565 AACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAA 138624 | ||||| || || || ||||| || || || | || || ||||| || | ||| Sbjct 204497 ATAGATTCATTATTCCCTAGAATTTGGGCAGTAGAAGCAGTTGGCATTGGAGCTAATAAA 204438 Query 138625 AGAGAATTCCGTAAACCGTGAAGCTTG---ATTCGTTCCTTGAGCGACGACCAGTCCCAC 138681 || ||||| | || ||| || |||| ||| |||||| | | ||| ||||| Sbjct 204437 AGGGAATTTCTTACACCATG---CTTGGCAATTTTTTCCTTCAATTTAGCCCAATCCCAT 204381 Query 138682 AAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCC----AAACTTGCGGG 138737 || | || ||| || ||||||||||| || ||||| ||||| ||||| | | Sbjct 204380 AAGTTACTTGGTGTTACATTCCACATATCATATTGTAAAATTCCTTTAGAAACTGGTGAT 204321 Query 138738 ACTGCCTTCGTACGAATCGTATACACCAAACTCTTGC-GCCAACTCGTTGCTCGCCTCGA 138796 || | || | || ||| ||| || | || || || ||| | ||||| | Sbjct 204320 ----CCATGATATGTTTCATATGGTCCATCCT-TAGCAGCTAATTCGCAGGAAGCCTCCA 204266 Query 138797 GCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTC-GGCGCTC 138855 || |||| ||||||||||| ||| | || ||| || | |||| || | | Sbjct 204265 AAGCTCCATGATAAATAGTTTCAAAAATTTTCTTATTAAGTTCTTTGGCCCGAGGAGATG 204206 Query 138856 TCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACA 138915 | | | || | | | | | || || || | ||||| || || | ||| | Sbjct 204205 T-GAATGGATATCTCATAAGCATAAAACAATCAGCTAATCCTTGAACACCAATTCCAATG 204147 Query 138916 GGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATG 138975 |||||||| | | ||||| ||||| | | ||||||||| || ||||| || Sbjct 204146 GGGCGATGTCTAAAGTTTGATTTCTTTGCCTCAGGTACAGGATAATAATTGACATCAATA 204087 Query 138976 ATTTTGTTTAAATTTC--GCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGT 139033 ||||| || |||||| ||| || | ||||| | | | | | | | ||||| Sbjct 204086 ATTTTATTCAAATTTTTAGCAAGA--ATCTTAGAAACAAGATGAAGTTGATTAAAATTAA 204029 Query 139034 ATG-TGCCCCCGTTGTCGTCGA-CGACGTCGACAAATTTGTTGACACAAATCGAGGCTAT 139091 ||| || |||| | | | | || || ||| | || | ||| || ||| Sbjct 204028 ATGATG-----GTTGCCCTTTCTCAATATCAACGAATCTATTCAATGCAATTGATCCTAA 203974 Query 139092 GTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACT 139151 || || || || ||||| || || | | ||||| |||||||| | ||| | |||| Sbjct 203973 ATTACAAACAGCAACTTCATCTGGAGCACAATATTCAACAATTTCAGTACAAAGATTAGA 203914 Query 139152 ACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAG 139211 ||| || || || || || ||||||||||| ||||||| |||||| ||| ||||||| Sbjct 203913 ACATTTAATTGTTCCCAAGTTTTGTTGATTACTTTTTCTATTACAATGATCCTTGTAAAC 203854 Query 139212 CATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGT--CCCTA 139269 |||||| || || |||||||| | ||| | || ||| ||| ||| | ||||| Sbjct 203853 CATATATGGAGTTCCAGTTTCTATTTGACTTTCACAAAT--CTTTTGCCAAATAACCCTA 203796 Query 139270 GCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAAT 139329 || | ||||| |||| | | || ||| |||||| ||| | || || ||| Sbjct 203795 GCCTTGATTTGTTTTCTGTAACGCTTCTCAGTCTCATACTTTGTGTACAATTTTTCAAAT 203736 Query 139330 CGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACC-ATAC 139388 || || | || | | |||| | | ||||||||| | |||| ||| Sbjct 203735 TCATCCCCCCAACAATCTTCTAATCCTGGACATTCATGAGGACACATCAATGACCAATAT 203676 Query 139389 GCCGTTCGCCTT-GACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAAT 139447 | || || || || |||| |||| ||| |||| ||| ||| | | | |||| Sbjct 203675 G--AATCTTTTTCAACACGTTTCATAAACAAATCAGGAACCCATAAACCATAGAATAAAT 203618 Query 139448 CGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGT 139507 | || || | ||||| | || | || || | | | || || | || | Sbjct 203617 CACGAGCACGTTCCTCTTCTGGTCCTGTATTTTTCTTAAGATCCAAAAATTCCATAATAT 203558 Query 139508 CAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGAT 139564 | || ||||||||||||| ||| || || | || || | || || |||||||||| Sbjct 203557 CTGCATGCCATGGTTCCAAATAAATTGCAAAAGCTCCAGGTCTCTTATTTCCACCTTGAT 203498 Query 139565 CGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTC 139624 | || | || | ||| ||| ||||| || | |||||| || ||| || | | ||||| Sbjct 203497 CAACATATCTTGCAGTATTGTTGAAAACTCTCAACATTGGTACCAATCCATTTGATGTTC 203438 Query 139625 CGTTGGTGCTACGGATGGGACTGTTGC--GAGCTCGGACGTCATGTACATTGATGCCGAT 139682 | || || | || || | || | | || || | ||| ||||| | || || Sbjct 203437 CATTAGTTCCACCAAT--AAATGATCCATTGGCACGAATACAATGAACATTTAATCCAAT 203380 Query 139683 TCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTAT 139742 || || || |||| || |||||| | || | ||||| || || || ||| || Sbjct 203379 ACCTCCAGCAGATTTTGAAATTAAAGCACATTGTTTCAATGTATCATAAATCCCTTCAAT 203320 Query 139743 GCTGTCGTCCTG-CATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGG 139801 || ||| | ||| || | | || ||||| || | ||| || | | || || | Sbjct 203319 AGAATC-TCCAGCCATTGTTAATAAGAAACATGAAGACAATTGTGGACGAGTTGTTCCTG 203261 Query 139802 CTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGACATCAATTCGTACGTT 139860 | ||| || || ||| || || || || ||||| | | ||||| || | ||| ||| Sbjct 203260 CATTAAATAGTGTTGGAGAAGCATGTGTAAACCATTTCTGT-GACATAAAATTGTATGTT 203202 Query 139861 TCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGT 139920 ||||| | ||||||| ||| || ||||| |||| |||| ||| || | |||| Sbjct 203201 TCGATAACTGAATCAATATCTTCTCCATGAATACCAACAGCAACTCTCATAAGTAAATGT 203142 Query 139921 TG 139922 || Sbjct 203141 TG 203140 >seq5 Length=1449561 Score = 98.7 bits (108), Expect = 9e-16 Identities = 373/585 (64%), Gaps = 8/585 (1%) Strand=Plus/Minus Query 138145 AGTGAAGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAA 138204 || ||| |||||| || | ||| |||| | || || |||||||||||||| | |||| Sbjct 1213785 AGAGAAACTTTATCGACTGAAAATTTTACAGGATTTGCAGCTGGTTTCGTTCTTAAATAA 1213726 Query 138205 TACATTCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCG 138264 ||||| || |||||||| ||| || ||| || | ||||| ||| | || || Sbjct 1213725 TACATCCCTGTTTTTAAACCAAGTTTCCATCCGCGAAAATGTATGGAACTACATATTCCG 1213666 Query 138265 TAAGTCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGA 138324 |||| ||||| || | | | || |||| ||||| ||||| || || || |||| | Sbjct 1213665 TAAGATGGTTTTGCTACATAAATATTAAGAGATTGGGATTGATCAATAAATGCTCCTCTA 1213606 Query 138325 TCAATGGCCATGTTAATTAAATTTTTACTTTT----CATCTCCCACACGGTCTTGTATAG 138380 || ||||| | ||| | | | ||||| || ||||| |||||||| || | Sbjct 1213605 TCTGCAGCCATATCAATGA----TGTCCTTTTGAGATATTTCCCATACGGTCTTATACAA 1213550 Query 138381 ATCACGAATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGAT 138440 ||| |||||| || ||| | ||||| || || || || ||| | Sbjct 1213549 ATCCTTAATATGATCTGGAATTCCTTTAATATGTTTTATAGATCCATTATAATAAATTAA 1213490 Query 138441 GCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCT 138500 | ||| | ||||| || ||| ||| || | | ||| |||| || || | | Sbjct 1213489 TTGGTTTAATAATTCATCATTCCACAAATTTAATTCAACCAAATCGTGTAAAAGGTGTGG 1213430 Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||||| || ||||| || || | |||||| || | | || | || || |||| Sbjct 1213429 GTTTACCACTTGAAAATCTCCAGACAATACCCGTCTCATATACAAATTTGAAGTATAAGG 1213370 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||||| || || || || || | ||| ||||| || | || || ||||| || || Sbjct 1213369 TTCAAATGACTCATTATTACCAAAAATTTGAGCAGTTGATGCTGTTGGCATTGGAGCTAC 1213310 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 ||| | ||||| | || ||| | | ||| ||| || | | ||||| ||||| Sbjct 1213309 CAACAATGAATTTCTTATACCATATTTTCTAATTTTTTCTTTTAATAATGACCAATCCCA 1213250 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCC 138725 |||| || || | ||||| | ||| || ||||| || || Sbjct 1213249 TAAATTACTTGGAGTAACTTTCCATAAATCATATTGTAAAATGCC 1213205 >seq28 Length=270198 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || |||| || || || ||||| ||||| || || ||||| || |||| Sbjct 52772 GATGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGA-GCCAT 52714 Query 24763 C-GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | || || | || | |||||| ||||||||||| || ||||| || ||||| |||| Sbjct 52713 CAGATACCATCGAGAATGTAAAAGCCAAGATCCAAGATAAGGAAGGTATCCCTCCAGATC 52654 Query 24822 AACAACGTTTGATCTTTGCCGGGAA 24846 | |||||| | ||||||||||| || Sbjct 52653 AGCAACGTCTTATCTTTGCCGGTAA 52629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449887421066800