Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq547 100 2e-16 seq29 86.0 5e-12 seq40 82.4 6e-11 >seq547 Length=3469 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || |||||||| || ||||| ||||| | ||| || || Sbjct 1822 AATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATC 1763 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| ||| | | || ||| |||||| ||||||||||| | || ||||| Sbjct 1762 TGACACTATCGACAACGTCAAATCCAAGATTCAAGACAAAGAAGGAATCCCACCAGATCA 1703 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | ||||| | ||| || ||||| || || |||| ||||| | | || ||||| Sbjct 1702 ACAACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 1643 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| ||||| || || || Sbjct 1642 CATCCAAAAGGAGTCAAC 1625 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || |||||||| || || || || || | || || ||| | Sbjct 1593 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 1534 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || || |||||| || || ||||| | || || ||| Sbjct 1533 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 1474 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||||| ||| || || || || || |||| ||||| | | ||||| || Sbjct 1473 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 1414 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 |||||||||||||| || | ||| |||| | | || || || ||||| Sbjct 1413 ATTCAAAAAGAATCAACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGAAA 1364 >seq29 Length=268433 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || |||||||| || || || || || | || || ||| | Sbjct 198542 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 198483 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || || |||||| || || ||||| | || || ||| Sbjct 198482 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 198423 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||||| ||| || || || || || |||| ||||| | | ||||| || Sbjct 198422 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 198363 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 |||||||||||||| || | ||| |||| | | || || || ||||| Sbjct 198362 ATTCAAAAAGAATCAACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGAAA 198313 >seq40 Length=203417 Score = 82.4 bits (90), Expect = 6e-11 Identities = 209/316 (66%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 |||||||| |||||||| | | ||| | ||||| || | ||| || ||||| | || Sbjct 27099 GTCTCCGGATTGTCACAGTTAGCACAGAGAACAAATTTTCTGATAAATCCATCCAAAAGA 27158 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 | ||||| || | ||||| || || || ||| | || || |||||| ||| Sbjct 27159 TTTTGTAATTTGGTAGCATCGTGATCTCCATTAACAATGTAGCGATCATTTTTGGTATCA 27218 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | | ||||| || || | || || || || || || || || || || | || | | Sbjct 27219 AAATTAGTTTGTGCTCCTAATTCACATCCAAAATATTTGGTTGGATACATTGGTGGTCTT 27278 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 | | || || || || || |||||| | || || ||||| || || || || ||| Sbjct 27279 TCCAAAGCTTTAGCAATCTCAACCATGTTAGCAATTACTGTCTTAATACCATTACCTTTT 27338 Query 34561 CCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACAT 34618 || || || ||||| | || | | |||||||||| || ||| | | || | |||| Sbjct 27339 CCCTCAACTTTGGCTTGAAGTTTTG--GCATTTTGTAACGATAGTATGGATCAACGACAT 27396 Query 34619 TGCGGTTAACGTTCAC 34634 | |||||||| || || Sbjct 27397 TACGGTTAACATTAAC 27412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412832492972330