Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq182 286 2e-72 >seq182 Length=14523 Score = 286 bits (316), Expect = 2e-72 Identities = 576/848 (68%), Gaps = 21/848 (2%) Strand=Plus/Minus Query 67574 ACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTA 67633 ||||||||| | | || ||| || ||||||||||| || ||| |||||||| Sbjct 8877 ACCGGCTCGCTGGGCCTCGACATGGCGCTCGGCATCGGCGGCCTGCCGGTCGGCCGGGTG 8818 Query 67634 GTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCC 67693 | ||| | | ||| || || || || || ||| | ||| | ||| ||| | |||||| Sbjct 8817 ATCGAGGTGTTCGGCCCCGAATCCTCGGGCAAGACGACGCTCGCCCTGCACACCGTGGCC 8758 Query 67694 AATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCT 67753 | | ||||||| || ||| ||||||| | ||||||||||||| | || ||||| Sbjct 8757 GAGGTCCAGAAGAAGGGCGGCGTGGCCGCCTTCGTCGACGCCGAACACGCGCTGGACCCG 8698 Query 67754 GAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACT 67813 | || || ||| || || | | ||| | || |||| |||||| ||||| Sbjct 8697 GTCTATGCGCAAAAGCTGGGCGTCAACCTGGACGACCTGCTGGTGTCGCAGCCCGACACG 8638 Query 67814 GGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATC 67873 ||||||||||| ||||||||||| ||| || || || |||| || |||| | Sbjct 8637 GGCGAGCAGGCGCTGGAGATCGTCGACACCCTGGTGCGCTCGGGCGCCGTGGACATCGTG 8578 Query 67874 GTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGAC 67933 || || ||||| || || |||||| ||| || ||||| ||||||| || || || ||| Sbjct 8577 GTGGTCGACTCGGTCGCCGCCCTGACGCCACGCGCGGAAATCGAAGGCGAGATGGGCGAC 8518 Query 67934 TCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACG 67993 | ||||||||| |||||||||||||| |||||| ||||||| ||||| | | || Sbjct 8517 AGCCTGCCCGGCCTGCAGGCCCGCCTGATGTCGCAGGCCCTGCGCAAACTGACGGCCTCG 8458 Query 67994 ATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAAC 68053 || ||| | || || ||||| | || ||| | || | ||||||||| | Sbjct 8457 ATCTCCAAGTCGAAGTGCATCGTCCTGTTCATCAACCAGATCCGTCACAAGATCGGCGTC 8398 Query 68054 GTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCG 68113 || |||||| || ||||| || || || || || || ||| |||||||||||| Sbjct 8397 ATG---TACGGCTCGCCCGAGACGACGACGGGCGGCAATGCGCTGAAGTTCTACGCCTCG 8341 Query 68114 GTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAAC 68173 ||||| | || ||||| | | || | | ||| | |||| |||| ||||||||| Sbjct 8340 GTGCGCCTCGACATCCGCCGCACCGGCGCGATCAAGAACCGCGACGAGGTCGTCGGCAAC 8281 Query 68174 CGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTT 68233 ||| ||||| ||||| |||||||||||| | || || ||| |||| ||| | | | | Sbjct 8280 ACCACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCTCCGCCGTTCCGCGAGG-TCA-TCT 8223 Query 68234 TC--CATCGTCTACGGCGAGGGCATTTCCCGCGAGGCCGAACTCCTCGACATGGCCGTTT 68291 || |||| | |||||||| ||||| ||| | ||| || |||| ||| ||| Sbjct 8222 TCGACATCATGTACGGCGAAGGCATCTCCAAGATCGGCGAGATCATCGATCTGGGCGT-- 8165 Query 68292 CCCGAGGGC----TCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATC 68347 | ||| | ||||| ||||||| || | |||||| |||| || |||| Sbjct 8164 --CAAGGCCAACATCATCGAGAAGTCCGGTTCGTGGTTCTCCTACGACTCCACCCGCATC 8107 Query 68348 GGCCAGGGCAAGCCCAAGACCG---TGCAGTGGCTGAAGGACAACCCGGACGTCGCCGCC 68404 || |||||| | | ||| || | ||| |||||| ||||||| ||| | ||| | Sbjct 8106 GGTCAGGGC---CGCGAGAACGCGAAGGAGTTCCTGAAGAACAACCCCGACATGGCCCTC 8050 Query 68405 TCCATCGA 68412 ||||||| Sbjct 8049 GCCATCGA 8042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247444141416480