Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_022065.1 Length=74533 Score E Sequences producing significant alignments: (Bits) Value seq182 324 7e-84 >seq182 Length=14523 Score = 324 bits (358), Expect = 7e-84 Identities = 486/688 (71%), Gaps = 7/688 (1%) Strand=Plus/Minus Query 65045 ACCGGCTCTATCGCTCTGGAC--GGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 65102 |||||||| | | || ||| ||||||| |||||||| || ||| ||||||| Sbjct 8877 ACCGGCTCGCTGGGCCTCGACATGGCGCTC--GGCATCGGCGGCCTGCCGGTCGGCCGGG 8820 Query 65103 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 65162 || | || | | |||||| ||||| || || ||| | || || || ||| | |||| Sbjct 8819 TGATCGAGGTGTTCGGCCCCGAATCCTCGGGCAAGACGACGCTCGCCCTGCACACCGTGG 8760 Query 65163 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 65222 || | | |||||| || ||| ||||||| | ||||||| || ||| | ||||||| Sbjct 8759 CCGAGGTCCAGAAGAAGGGCGGCGTGGCCGCCTTCGTCGACGCCGAACACGCGCTGGACC 8700 Query 65223 CTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACA 65282 | | || || | ||| || || |||| ||| |||| ||||| ||||| |||| Sbjct 8699 CGGTCTATGCGCAAAAGCTGGGCGTCAACCTGGACGACCTGCTGGTGTCGCAGCCCGACA 8640 Query 65283 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCG 65342 | ||||||||||| ||||||||||| ||| ||| || || |||| || ||||| Sbjct 8639 CGGGCGAGCAGGCGCTGGAGATCGTCGACACCCTGGTGCGCTCGGGCGCCGTGGACATCG 8580 Query 65343 TCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGG 65402 | || || ||||| || || |||||| ||| ||||| || |||||||||| || || | Sbjct 8579 TGGTGGTCGACTCGGTCGCCGCCCTGACGCCACGCGCGGAAATCGAAGGCGAGATGGGCG 8520 Query 65403 ACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCA 65462 |||| | ||||||||| || ||||| |||||||||||| ||||||| || || | | Sbjct 8519 ACAGCCTGCCCGGCCTGCAGGCCCGCCTGATGTCGCAGGCCCTGCGCAAACTGACGGCCT 8460 Query 65463 CCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCA 65522 | ||||||| | || | || | |||||||| | || | ||||||||| Sbjct 8459 CGATCTCCAAGTCGAAGTGCATCGTCCTGTTCATCAACCAGATCCGTCACAAGATCGGCG 8400 Query 65523 ACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCT 65582 | || |||||| || ||||| || ||||||||||| || ||| ||||||||||| Sbjct 8399 TCATG---TACGGCTCGCCCGAGACGACGACGGGCGGCAATGCGCTGAAGTTCTACGCCT 8343 Query 65583 CAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCA 65642 | || ||| | || |||| |||| || | | ||| | |||| |||| ||||||| Sbjct 8342 CGGTGCGCCTCGACATCCGCCGCACCGGCGCGATCAAGAACCGCGACGAGGTCGTCGGCA 8283 Query 65643 ACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGAGT 65702 || |||||| || ||||| |||||||||||| | || |||||| |||| | | | | Sbjct 8282 ACACCACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCTCCGCCGTTCCGCGAGGTCATCT 8223 Query 65703 TCTCCGTCGTGTACGGGGAGGGCATCTC 65730 || | || ||||||| || |||||||| Sbjct 8222 TCGACATCATGTACGGCGAAGGCATCTC 8195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238375541468540