Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq1390 1377 0.0 seq100 304 3e-78 seq1075 194 4e-45 >seq1390 Length=1008 Score = 1377 bits (1526), Expect = 0.0 Identities = 766/768 (99%), Gaps = 0/768 (0%) Strand=Plus/Plus Query 35186 GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC 35245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC 184 Query 35246 TTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAA 35305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 TTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAA 244 Query 35306 AAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCA 35365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245 AAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCA 304 Query 35366 GTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAA 35425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 GTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAA 364 Query 35426 TGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTACG 35485 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 365 TGGCGTTGGATGCCGGGCAACTGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTACG 424 Query 35486 TCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTC 35545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 TCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTC 484 Query 35546 ATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGC 35605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 ATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGC 544 Query 35606 TGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAA 35665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 TGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAA 604 Query 35666 CGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATA 35725 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 CGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATA 664 Query 35726 TGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATC 35785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 TGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATC 724 Query 35786 AGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTAAATCTGAGGCAGCACCTGGCA 35845 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 725 AGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCA 784 Query 35846 CGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATC 35905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 785 CGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATC 844 Query 35906 GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC 35953 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC 892 >seq100 Length=36487 Score = 304 bits (336), Expect = 3e-78 Identities = 826/1249 (66%), Gaps = 38/1249 (3%) Strand=Plus/Minus Query 18571 TGAATCGCCACAGATAATCTAGACACT-TCCGAGCCGCTGATAATATTGGTTTTCGTATT 18629 ||||||||| | | | ||||||||| ||| ||| | || |||| | || || || | Sbjct 5131 TGAATCGCCCCTGGTTTCCTAGACACTCTCCAAGCT-CAGAAAATAGCGTTTCTCATACT 5073 Query 18630 CAGTTGGTGGCATATGATCACTCGAACCATGCCGACGCTTACTGTTATAAAACATTTCGA 18689 | || | || |||| | | ||||||||||| || ||| || ||||| |||| Sbjct 5072 CTACCGGCGACAGCTGATTGTTGAAGCCATGCCGACGTTTTACGTTGTAGAACATCTCGA 5013 Query 18690 TGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTAGATCTTTTTCTTTATCC 18749 ||||||| || | ||||| ||||| ||||| ||||| |||||| || | | |||| Sbjct 5012 TGTAATCGAACACATCACTACGAGCATCTTCCCGCGTGGTGTAGATTTTCCGCCTGATCC 4953 Query 18750 GTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTACCGC 18809 |||| |||||||| ||||||||||| || | || || || |||||||||||||| || | Sbjct 4952 GTTCCCGTTTCAGAAGCTGGAAAAAGCTATGGGCCACGGCATTGTCATGACAGTTGCCTC 4893 Query 18810 GACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGACTGCCACTCATAGCTTG 18869 | || ||||| ||| | ||| || | |||| || |||| || | || Sbjct 4892 GGCGACTCATGCTGGCAACCAAATTGTTCGCCTTCAAAAAGCTGCGCCAATCGGAACTGC 4833 Query 18870 TGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTTTGAGGATTACGTCGCCACA 18929 |||| || ||||| ||||| || ||||||||||||| || || || || || | ||| | Sbjct 4832 TGTATTGGCTGCCCTGATCGGAGTGAACCAGCACCTCCTGTTTTGGTTTTCGCCTCCAAA 4773 Query 18930 CGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATCCGGGGCTGCATTGACCAGC 18989 | ||||||| | |||| | | | | ||| | |||||| | | || ||||||||||| Sbjct 4772 CCGCCATCAATAACGCATCAATGGCCAAATCACTGGTCATCTGCGACTTCATTGACCAGC 4713 Query 18990 CAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAGCCAGCCTTCGTGAG 19049 ||| || | || || ||||| || | ||||| |||| ||||||||||||||||| | Sbjct 4712 CAACGACCTGACGAGAAAACAGATCCAGCACCACTGCCAAATACAGCCAGCCTTCGTACG 4653 Query 19050 TCCGGATGTAGGTGATGTCCGTTACCCAACGCTCATCCGGTGCTTCCGAGTTGAACTGCC 19109 | || |||||||||||||| | |||||| || | ||| || | | ||||| | Sbjct 4652 TACGAATGTAGGTGATGTCGATGACCCAAACCTTGTTGGGTTCTACGACATCAAACTGGC 4593 Query 19110 GCTGGAGCCTGTTGGGCGTCACGA-TGCTGG-TTTCACCCTTACGTGCCCGTG-GGCTAC 19166 ||| ||| |||||| | ||| ||||| || | || ||| | || | | | | | Sbjct 4592 GCTTCAGCAAGTTGGGTGAGGCGACCGCTGGCTTACCGCCGTACTTTCCAGAGCGACGTC 4533 Query 19167 GGTACCCGACCTGAGCCCTTATCCCGGCACGCTTCATCAG--TCGCCAGACACGGTTAAC 19224 | || || ||||| | | || || | |||||| | ||| || || | | Sbjct 4532 GATAACCTGACTGAGAACGCAGACCTTCAAGACGCATCAGCCTTGCC--ACCCGATGACG 4475 Query 19225 TCCGCACTGTTGTCCGGTATCCCGCAGGTCGAGGTGGATCTTGCGATAACCATAAACGCA 19284 || || | | |||| || ||||| ||| | ||| |||||||| |||||||||| Sbjct 4474 ACCACAATCCTCACCGGCCTCGCGCAGATCGTCATAGATTTTGCGATAGCCATAAACGCC 4415 Query 19285 ACCCGACTCCAGCCAGAACTGCTTTATCAGCCCCGTCAGCCTCAGGTCAGCATGATGCCG 19344 || ||||| ||| | ||||| |||| ||| ||| | | |||| | | || Sbjct 4414 GCCGCTCTCCAACCATGAATGCTTAATCAAACCCAGCAGTCGCTGGTCGTCTTTGGCTCG 4355 Query 19345 CCGTGAATCCGGCTGCTGAAGCCAGGCGTAAAAACCACTCGGATGCACATCCAGCACCCG 19404 | || | ||||| |||||||||||| |||| || ||||| || | |||| | | Sbjct 4354 TAGAGATTGCGGCTCAGCCAGCCAGGCGTAATAACCGCTGGGATGGACTTTCAGCGTCAG 4295 Query 19405 ACAAAGCAGTCG-------GACAGGCCAGCAATGGGTGTTGTCACGGATAAAGGCGTACC 19457 |||||| |||| || ||| || ||| || ||||||||||||| Sbjct 4294 GCAAAGCCGTCGAATCGAATACTCGCCCGC-----GTGCTG--CTTGATAAAGGCGTACT 4242 Query 19458 TCAGTCGGACAGCTTTGCGAAGTACGCCGCTG-TAGATTCAATATGTCCCGTTCGTCGGT 19516 |||| || || ||| || |||||||| || | || || ||||| | || || || Sbjct 4241 TCAGCCGCACTCCTTGGCAAAGTACGCGGCGGCCTTCTTTAAGATGTCTCTCTCTTCCGT 4182 Query 19517 AACCCGCTTCAGCTCTTTCTGGAGGCGTCGGATCTCAGCCTG------AGCGTCTGACTG 19570 || ||||| || || | || || | ||| ||||| | | ||| || Sbjct 4181 CACACGCTTGAGTTCAGCGCGTAGCTTGCGCAACTCGGCCTGCTGATCATCATCTTGCT- 4123 Query 19571 GACTTTATTGGTTGAGGAATCCGGGCCATATGCCTTTATCCAGGCATAAAGACTGTGGGT 19630 ||| | | ||| || | || || |||| |||||||| ||||| ||||| Sbjct 4122 GACGCTGCT-CTTGGGG----CTTGCTGTAGACCTTGATCCAGGCGTAAAGGCTGTGCAC 4068 Query 19631 GGTGATACCGAGACGTGTTGCCACGCTGGAAACAGAATGGCCGCGATCAACAACCTGTTT 19690 || || || ||||| || || || ||||| | ||| || || || || Sbjct 4067 GGACATGCCCAGACGCTGGGCGACATCGGCAACAGGTTTGCCTTTTTCGGTCACTTGCTT 4008 Query 19691 TACCGCTTCAATTTTAAACTCTTCGGGATAACGCTTACCGCTCATGGGCACCT-CTCTTT 19749 |||||||| || || ||||||||||| ||||||| || ||||| ||||||| || ||| Sbjct 4007 GACCGCTTCGATCTTGAACTCTTCGGGGTAACGCTGACGACTCAT-GGCACCTCCTATTT 3949 Query 19750 AAGTCATCTTAAATGACTCTGAGGTGTCTGTTAAACCTGTGGCGATTCA 19798 | | ||| | || ||||||||| |||| | ||| ||||| Sbjct 3948 GGGCCTCATTATGAGGCTTGGAGGTGTCTACGAAACTAGGGGCTATTCA 3900 >seq1075 Length=1529 Score = 194 bits (214), Expect = 4e-45 Identities = 247/336 (74%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 18746 ATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTA 18805 || ||||||||||| || || ||||| || || || || || || |||||||| ||||| Sbjct 1295 ATGCGTTCACGTTTGAGCAGTTGGAAGAAGCTCTCCGCCACAGCATTGTCATGGCAGTTG 1236 Query 18806 CCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGACTGCCACTCATAG 18865 ||||| || ||||| |||| | || || |||||| | ||||| || | | Sbjct 1235 CCGCGTCGACTCATGCTGCTGACTAGATTATGGTCCCGCAGGAAGGCTTGCCATTCGTGG 1176 Query 18866 CTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACC--TGCTTTTGAGGATTACGTC 18923 | |||| |||| | |||||| || ||||| ||||| ||| ||| |||| | ||||||| Sbjct 1175 CCTGTGAACTGGCAGCCTTGGTCGGAATGGACCAGGACCGATGCATTTG--GCTTACGTC 1118 Query 18924 GCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATCCGGGGCTGC--AT 18981 |||||| |||||||| || |||| ||| || | |||| | || || |||| || Sbjct 1117 GCCACAATGCCATCAGCAGAGCATCCAGCACCAGATCCGTATCGATACGA--CTGCCCAT 1060 Query 18982 TGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAGCCAGCC 19041 ||||| || | || | || |||||||| || | || || ||||| ||||||||||| Sbjct 1059 GGACCAACCCACCACCTGACGTGAGAACAGATCGATCACAACGGCCAGGTACAGCCAGCC 1000 Query 19042 TTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCA 19077 |||||| || ||||||||||||||||| || ||||| Sbjct 999 TTCGTGGGTTCGGATGTAGGTGATGTCTGTGACCCA 964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127101268058400